Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq280 150 3e-31 seq21746 129 1e-24 >seq280 Length=341618 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || || | ||||| |||| |||||| || ||| Sbjct 106016 ATTTGCATACCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTA 106075 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | ||| || | || || ||||| || ||||| | ||||||| Sbjct 106076 TAATCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGA 106135 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| ||||||| ||| | |||| |||||||||||| Sbjct 106136 TCTGGTGGGATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAA 106195 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || ||||| || || | ||||| |||||||||||||| Sbjct 106196 GGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || || | ||||| |||| |||||| || ||| Sbjct 114262 ATTTGCATACCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTA 114321 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | ||| || | || || ||||| || ||||| | ||||||| Sbjct 114322 TAATCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGA 114381 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| ||||||| ||| | |||| |||||||||||| Sbjct 114382 TCTGGTGGGATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAA 114441 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || ||||| || || | ||||| |||||||||||||| Sbjct 114442 GGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | ||||| ||| || || || || ||||| || || | Sbjct 106493 CGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCG 106552 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| |||||||| ||||| | || ||||| || || || || ||||| Sbjct 106553 TCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 106612 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||||| ||| |||||||||||| | ||||| || ||||| || Sbjct 106613 TCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATG 106672 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || | || || || || ||||||||||| Sbjct 106673 GTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||||||| | ||||| ||| || || || || ||||| || || | Sbjct 114739 CGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCG 114798 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| |||||||| ||||| | || ||||| || || || || ||||| Sbjct 114799 TCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 114858 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||||| ||| |||||||||||| | ||||| || ||||| || Sbjct 114859 TCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATG 114918 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || | || || || || ||||||||||| Sbjct 114919 GTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216 ||||||||||| || || |||||| ||||| || || || | ||| || || || Sbjct 106276 ATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTG 106335 Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 || || || |||||||| | |||||||| || || |||||||| ||||| || ||||| Sbjct 106336 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTT 106395 Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | ||| | ||| ||| |||||||||| |||||| || | ||| || |||||||| || Sbjct 106396 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGT 106455 Query 193337 TAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || ||||| Sbjct 106456 CAAAGTTTTGACGAAAATCTGCAT 106479 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216 ||||||||||| || || |||||| ||||| || || || | ||| || || || Sbjct 114522 ATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTG 114581 Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 || || || |||||||| | |||||||| || || |||||||| ||||| || ||||| Sbjct 114582 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTT 114641 Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | ||| | ||| ||| |||||||||| |||||| || | ||| || |||||||| || Sbjct 114642 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGT 114701 Query 193337 TAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || ||||| Sbjct 114702 CAAAGTTTTGACGAAAATCTGCAT 114725 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | || | || || |||||| |||||||| || || | Sbjct 104669 CGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCG 104728 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||| ||||||||||| || | ||||||||| ||||| || ||||| ||| Sbjct 104729 TCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTA 104788 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| ||| | |||| || || || || | |||||| || | || || Sbjct 104789 TCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATG 104848 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || ||||| Sbjct 104849 GTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| ||| | |||| ||| || || || Sbjct 105103 AATTTGCATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTT 105162 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || || | || || |||||||| ||||| ||||| || | ||||| Sbjct 105163 GTAGTCCGACAAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTG 105222 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || |||||||||||||| || |||| || | ||| || || || || Sbjct 105223 ATCTGGAGGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGA 105282 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || | || || |||||||| ||||| || || || || |||||||| Sbjct 105283 CGGCTCAACCTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| ||| | |||| ||| || || || Sbjct 105332 ATTTGCATACCACCACGGAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTG 105391 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | || || | || || || |||||||| || | || || Sbjct 105392 TAGTCCGACAAGGTGCGCCCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGG 105451 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || |||| || | ||| ||| || ||||| Sbjct 105452 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGAT 105511 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||| || | ||||||||||| || || || || || || || ||||||||| Sbjct 105512 GGCTCAACCTCCAAGGTTATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATT 105568 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| || | || || || ||||| || ||||| || ||||| || Sbjct 113668 TGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATC 113727 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || ||||| | |||||| || | ||||||||||| || Sbjct 113728 TTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTTTGCCA 113787 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || ||||||||| Sbjct 113788 GTCAGGGTCTTCACGAAGATTTGCATT 113814 >seq21746 Length=7614 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || | |||| || | || | ||| || ||| || |||||| Sbjct 2425 ATACCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 2366 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || ||||| || ||||| ||||| || | |||||||| || Sbjct 2365 GACAAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGT 2306 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 ||||| |||||||||||||| ||||| | || | |||| ||||| || |||| ||| Sbjct 2305 GGTATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCG 2246 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 || || | ||| || || || || || || ||||| || || || |||||||| || || Sbjct 2245 ACCTCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTGTTCGT 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898679736914400