Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq280 150 3e-31
seq21746 129 1e-24
>seq280
Length=341618
Score = 150 bits (166), Expect = 3e-31
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || || | ||||| |||| |||||| || |||
Sbjct 106016 ATTTGCATACCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTA 106075
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| ||||| || || | ||| || | || || ||||| || ||||| | |||||||
Sbjct 106076 TAATCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGA 106135
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || ||||| |||||||| ||||||| ||| | |||| ||||||||||||
Sbjct 106136 TCTGGTGGGATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAA 106195
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||| || ||||| || ||||| || || | ||||| ||||||||||||||
Sbjct 106196 GGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 150 bits (166), Expect = 3e-31
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || || | ||||| |||| |||||| || |||
Sbjct 114262 ATTTGCATACCACCACGGAGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTA 114321
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| ||||| || || | ||| || | || || ||||| || ||||| | |||||||
Sbjct 114322 TAATCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGA 114381
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || ||||| |||||||| ||||||| ||| | |||| ||||||||||||
Sbjct 114382 TCTGGTGGGATACCTTCCTTATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAA 114441
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||| || ||||| || ||||| || || | ||||| ||||||||||||||
Sbjct 114442 GGTTCAACCTCCAGAGTGATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
Score = 132 bits (146), Expect = 9e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||||||| | ||||| ||| || || || || ||||| || || |
Sbjct 106493 CGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCG 106552
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || |||||||| |||||||| ||||| | || ||||| || || || || |||||
Sbjct 106553 TCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 106612
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| ||||| ||| |||||||||||| | ||||| || ||||| ||
Sbjct 106613 TCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATG 106672
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || | || || || || |||||||||||
Sbjct 106673 GTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710
Score = 132 bits (146), Expect = 9e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||||||| | ||||| ||| || || || || ||||| || || |
Sbjct 114739 CGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCCG 114798
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || |||||||| |||||||| ||||| | || ||||| || || || || |||||
Sbjct 114799 TCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 114858
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| ||||| ||| |||||||||||| | ||||| || ||||| ||
Sbjct 114859 TCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATG 114918
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || | || || || || |||||||||||
Sbjct 114919 GTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216
||||||||||| || || |||||| ||||| || || || | ||| || || ||
Sbjct 106276 ATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTG 106335
Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276
|| || || |||||||| | |||||||| || || |||||||| ||||| || |||||
Sbjct 106336 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTT 106395
Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
| ||| | ||| ||| |||||||||| |||||| || | ||| || |||||||| ||
Sbjct 106396 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGT 106455
Query 193337 TAGCGTTTTTACAAATATTTGCAT 193360
| ||||| || || || |||||
Sbjct 106456 CAAAGTTTTGACGAAAATCTGCAT 106479
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216
||||||||||| || || |||||| ||||| || || || | ||| || || ||
Sbjct 114522 ATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGACAATGTGCGTCCATCCTCCAACTG 114581
Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276
|| || || |||||||| | |||||||| || || |||||||| ||||| || |||||
Sbjct 114582 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATTTT 114641
Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336
| ||| | ||| ||| |||||||||| |||||| || | ||| || |||||||| ||
Sbjct 114642 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTACCCGT 114701
Query 193337 TAGCGTTTTTACAAATATTTGCAT 193360
| ||||| || || || |||||
Sbjct 114702 CAAAGTTTTGACGAAAATCTGCAT 114725
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | || | || || |||||| |||||||| || || |
Sbjct 104669 CGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGACAAAGTACGGCCG 104728
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || ||||| ||||||||||| || | ||||||||| ||||| || ||||| |||
Sbjct 104729 TCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTA 104788
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||||| ||| | |||| || || || || | |||||| || | || ||
Sbjct 104789 TCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGATG 104848
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || |||||
Sbjct 104849 GTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 122 bits (134), Expect = 2e-22
Identities = 169/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | | || || |||| ||| | |||| ||| || || ||
Sbjct 105103 AATTTGCATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTT 105162
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || || || | || || |||||||| ||||| ||||| || | |||||
Sbjct 105163 GTAGTCCGACAAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTG 105222
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| || |||||||||||||| || |||| || | ||| || || || ||
Sbjct 105223 ATCTGGAGGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGA 105282
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||| || | || || |||||||| ||||| || || || || ||||||||
Sbjct 105283 CGGCTCAACCTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339
Score = 98.7 bits (108), Expect = 2e-15
Identities = 164/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || |||| ||| | |||| ||| || || ||
Sbjct 105332 ATTTGCATACCACCACGGAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTG 105391
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| || || || | || || | || || || |||||||| || | || ||
Sbjct 105392 TAGTCCGACAAGGTGCGCCCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGG 105451
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| || ||||| || |||| || | ||| ||| || |||||
Sbjct 105452 TCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGAT 105511
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
| |||||| || | ||||||||||| || || || || || || || |||||||||
Sbjct 105512 GGCTCAACCTCCAAGGTTATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATT 105568
Score = 89.7 bits (98), Expect = 9e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| || | || || || ||||| || ||||| || ||||| ||
Sbjct 113668 TGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATC 113727
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| ||| || ||||| | |||||| || | ||||||||||| ||
Sbjct 113728 TTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGTTTTGCCA 113787
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || |||||||||
Sbjct 113788 GTCAGGGTCTTCACGAAGATTTGCATT 113814
>seq21746
Length=7614
Score = 129 bits (142), Expect = 1e-24
Identities = 172/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | || || | |||| || | || | ||| || ||| || ||||||
Sbjct 2425 ATACCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 2366
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| || || | | ||| || ||||| || ||||| ||||| || | |||||||| ||
Sbjct 2365 GACAAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGT 2306
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
||||| |||||||||||||| ||||| | || | |||| ||||| || |||| |||
Sbjct 2305 GGTATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCG 2246
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369
|| || | ||| || || || || || || ||||| || || || |||||||| || ||
Sbjct 2245 ACCTCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTGTTCGT 2187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898679736914400
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