Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq22 165 1e-35
seq280 156 6e-33
seq21746 118 2e-21
>seq22
Length=933496
Score = 165 bits (182), Expect = 1e-35
Identities = 472/718 (66%), Gaps = 29/718 (4%)
Strand=Plus/Minus
Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048
|||||| |||||||| | ||| | ||||| | | ||||||||| || | | | |
Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740
Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108
||||| |||||| | | ||||||| || || | ||||| || || || | ||
Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680
Query 18109 TA------CCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162
| ||||| ||||| || | ||| | ||| || || || | || ||
Sbjct 329679 AATACGGTCCCTAC---TTGGC---TTCTGAATGAGGTG-TTGGAACATCAGG--CAAGC 329629
Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222
|||||| ||||| ||||| || || || |||| || ||| || || || || ||
Sbjct 329628 AAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGG 329569
Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282
||||| || | ||| || |||||||| || || || ||||| | | |||||| || ||
Sbjct 329568 CATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCC 329509
Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATTTATTGCTCAGTAT 18339
||||| || || ||||||| | ||| |||| || |||| | | | ||
Sbjct 329508 TTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTC--GATGAA-AT 329452
Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399
||| ||||||| || | | | | || || |||| |||||||| ||
Sbjct 329451 CCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAA 329392
Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459
||| | ||| ||| ||| ||| || ||||| || || ||||| | ||||||||
Sbjct 329391 CAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTC 329332
Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG-GATATT 18518
|||||| | | ||||| || || ||||| | ||| || | | ||||| | ||| ||
Sbjct 329331 AGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGAT-TT 329273
Query 18519 GAATCTC---GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575
||| || ||| || | ||| || || || ||||| || ||||| || | | |
Sbjct 329272 GAACTTCTTGGCTG---AAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGG 329216
Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635
| || ||||||||||| | ||||||||| |||||| || ||||| ||| |
Sbjct 329215 CAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAAT 329156
Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693
|||| |||||||| || || ||||| |||||| ||||| || |||| ||| |||||
Sbjct 329155 CATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCTG 329098
>seq280
Length=341618
Score = 156 bits (172), Expect = 6e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| |||||||||||||||| ||||| || || | || || ||| |||
Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| |||||| ||||| |||||||| ||||| || || ||||| |||
Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | || || | ||||| ||||||||||||||| | | || || || ||||||||
Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
||| |||||| | || || ||||||||
Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGT 106043
Score = 156 bits (172), Expect = 6e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||||||| |||||||||||||||| ||||| || || | || || ||| |||
Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| |||||| ||||| |||||||| ||||| || || ||||| |||
Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | || || | ||||| ||||||||||||||| | | || || || ||||||||
Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
||| |||||| | || || ||||||||
Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGT 114289
Score = 102 bits (112), Expect = 1e-16
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || | || || ||||||| |||||||| || || || || || ||
Sbjct 105568 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 105509
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| |||||| || || || ||||| || ||||| || |||||||| ||
Sbjct 105508 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 105449
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||| | ||||||| ||| ||||||||||||||||| | || || || || || |
Sbjct 105448 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGGCGCACCTTGTCGGACTACA- 105390
Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| | || || ||||| ||
Sbjct 105389 -ACATCCAAAAGGAGTCTACCCTCCATTTGGT 105359
Score = 102 bits (112), Expect = 1e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || | || || ||||||| |||||||| || || || || || ||
Sbjct 113814 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 113755
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| |||||| || || || ||||| || ||||| || |||||||| ||
Sbjct 113754 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 113695
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
||| | ||||||| ||| |||||||||||||||||
Sbjct 113694 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGA 113659
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||| ||||| || || || || || || ||
Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || || || || || |||||||| || || ||||| |||
Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | || || | ||||| ||||||||||||||| | | ||||| || |||||||
Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATA-- 104934
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| | || || ||||| ||
Sbjct 104933 ACATCCAAAAGGAGTCTACCCTCCATTTGGT 104903
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || | ||||| ||||| || || || || || || ||
Sbjct 105339 ATGCAAATCTTCGTGAAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 105280
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || |||||| || || || ||||||||||||||||| |||||||| |||
Sbjct 105279 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 105220
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||||| |||||||| || | ||||| | | || || || || || |
Sbjct 105219 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACA-- 105162
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| | || || ||||| ||
Sbjct 105161 ACATCCAAAAGGAGTCTACCCTCCATTTGGT 105131
>seq21746
Length=7614
Score = 118 bits (130), Expect = 2e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876
|| |||||||| || || | |||||| | || || || || || || || || |||||
Sbjct 2190 AACAAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAG 2249
Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936
|||||| | ||| ||| || || |||||| |||||||||||||| ||||| |||
Sbjct 2250 CCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCA 2309
Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996
|| |||||| | ||||||| ||||| ||||| | |||||| | ||||| || ||
Sbjct 2310 GATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGAC 2369
Query 155997 TATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034
|| || || || ||| ||| | || || || || |||||
Sbjct 2370 TACAACAT-TCAAAAGGAGTCAACCCTCCACTTGGTGTT 2407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731079108172000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |