Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq22 165 1e-35 seq280 156 6e-33 seq21746 118 2e-21 >seq22 Length=933496 Score = 165 bits (182), Expect = 1e-35 Identities = 472/718 (66%), Gaps = 29/718 (4%) Strand=Plus/Minus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 |||||| |||||||| | ||| | ||||| | | ||||||||| || | | | | Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 ||||| |||||| | | ||||||| || || | ||||| || || || | || Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 18109 TA------CCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | ||||| ||||| || | ||| | ||| || || || | || || Sbjct 329679 AATACGGTCCCTAC---TTGGC---TTCTGAATGAGGTG-TTGGAACATCAGG--CAAGC 329629 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222 |||||| ||||| ||||| || || || |||| || ||| || || || || || Sbjct 329628 AAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGG 329569 Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282 ||||| || | ||| || |||||||| || || || ||||| | | |||||| || || Sbjct 329568 CATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCC 329509 Query 18283 CTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATTTATTGCTCAGTAT 18339 ||||| || || ||||||| | ||| |||| || |||| | | | || Sbjct 329508 TTCAACCGCGGCAAATGCTATTATACGTTCGCCAAAGTTGGCCGATTTC--GATGAA-AT 329452 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 ||| ||||||| || | | | | || || |||| |||||||| || Sbjct 329451 CCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAA 329392 Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459 ||| | ||| ||| ||| ||| || ||||| || || ||||| | |||||||| Sbjct 329391 CAAGTAATCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTC 329332 Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG-GATATT 18518 |||||| | | ||||| || || ||||| | ||| || | | ||||| | ||| || Sbjct 329331 AGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGAT-TT 329273 Query 18519 GAATCTC---GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 ||| || ||| || | ||| || || || ||||| || ||||| || | | | Sbjct 329272 GAACTTCTTGGCTG---AAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGG 329216 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | || ||||||||||| | ||||||||| |||||| || ||||| ||| | Sbjct 329215 CAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAAT 329156 Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 |||| |||||||| || || ||||| |||||| ||||| || |||| ||| ||||| Sbjct 329155 CATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCTTCTGCCTG 329098 >seq280 Length=341618 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||||||||||||||| ||||| || || | || || ||| ||| Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| |||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || || | ||||| ||||||||||||||| | | || || || |||||||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| | || || |||||||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGT 106043 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||||||||||||||| ||||| || || | || || ||| ||| Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| |||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || || | ||||| ||||||||||||||| | | || || || |||||||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| | || || |||||||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGT 114289 Score = 102 bits (112), Expect = 1e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||| |||||||| || || || || || || Sbjct 105568 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 105509 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| || || || ||||| || ||||| || |||||||| || Sbjct 105508 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 105449 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| ||| ||||||||||||||||| | || || || || || | Sbjct 105448 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGGCGCACCTTGTCGGACTACA- 105390 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || || ||||| || Sbjct 105389 -ACATCCAAAAGGAGTCTACCCTCCATTTGGT 105359 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||||| |||||||| || || || || || || Sbjct 113814 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 113755 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| || || || ||||| || ||||| || |||||||| || Sbjct 113754 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 113695 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||||| ||| ||||||||||||||||| Sbjct 113694 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGA 113659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||| ||||| || || || || || || || Sbjct 105111 ATGCAAATTTTCGTCAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCA 105052 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || || || |||||||| || || ||||| ||| Sbjct 105051 GACACCATCGAGAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGATCAA 104992 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || || | ||||| ||||||||||||||| | | ||||| || ||||||| Sbjct 104991 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATA-- 104934 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || || ||||| || Sbjct 104933 ACATCCAAAAGGAGTCTACCCTCCATTTGGT 104903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| ||||| || || || || || || || Sbjct 105339 ATGCAAATCTTCGTGAAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCA 105280 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || || || ||||||||||||||||| |||||||| ||| Sbjct 105279 GACACCATCGAAAACGTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 105220 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||||| || | ||||| | | || || || || || | Sbjct 105219 CAACGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACA-- 105162 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || || ||||| || Sbjct 105161 ACATCCAAAAGGAGTCTACCCTCCATTTGGT 105131 >seq21746 Length=7614 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || |||||||| || || | |||||| | || || || || || || || || ||||| Sbjct 2190 AACAAAATGCAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAG 2249 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 |||||| | ||| ||| || || |||||| |||||||||||||| ||||| ||| Sbjct 2250 CCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCA 2309 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||| | ||||||| ||||| ||||| | |||||| | ||||| || || Sbjct 2310 GATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGAC 2369 Query 155997 TATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || || || ||| ||| | || || || || ||||| Sbjct 2370 TACAACAT-TCAAAAGGAGTCAACCCTCCACTTGGTGTT 2407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731079108172000