Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq280 145 1e-29 seq22 138 2e-27 seq21746 129 1e-24 seq322 118 2e-21 seq4530 109 1e-18 >seq280 Length=341618 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | || || || |||||||| || |||| || || ||||| || ||| Sbjct 106250 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 106309 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| ||||| || || ||||| || ||||| | |||||||| ||| Sbjct 106310 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 106369 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || |||||| ||| ||||| || | ||| || | || Sbjct 106370 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 106429 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||||||||| || || ||||| | || |||||||| Sbjct 106430 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | || || || |||||||| || |||| || || ||||| || ||| Sbjct 114496 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 114555 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| ||||| || || ||||| || ||||| | |||||||| ||| Sbjct 114556 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 114615 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || |||||| ||| ||||| || | ||| || | || Sbjct 114616 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 114675 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||||||||| || || ||||| | || |||||||| Sbjct 114676 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | |||| ||| || ||| || ||||| Sbjct 106478 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 106537 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || ||||||||||| || ||||||||||| | || ||||| ||| Sbjct 106538 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 106597 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||||||||| |||| ||| || | ||| Sbjct 106598 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 106657 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 106658 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | |||| ||| || ||| || ||||| Sbjct 114724 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 114783 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || ||||||||||| || ||||||||||| | || ||||| ||| Sbjct 114784 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 114843 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||||||||| |||| ||| || | ||| Sbjct 114844 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 114903 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 114904 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || ||||| | |||| ||| || ||| || || || Sbjct 105110 ATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC 105169 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || | || |||||||||||||| || || || || | |||||||| || Sbjct 105170 GACAAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGA 105229 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || || || || || | ||||||| || Sbjct 105230 GGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCA 105289 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||||||||||| || || | || || ||||| Sbjct 105290 ACCTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || ||||| | ||| | || || ||||| || || || Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || | || ||||| |||||||| ||||| || || | ||||||||| || || Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| ||||| || ||||| ||| ||||| || | ||||||| || || Sbjct 104777 ATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACC 104836 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||||||||| || | ||| || | || |||||||| Sbjct 104837 TCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | |||| ||| || ||| || || || || || || || Sbjct 105578 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 105637 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||| || || || |||||||| | ||| ||||| || || || || || Sbjct 105638 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 105697 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || ||| ||| || || || | || || | || || || | || Sbjct 105698 TTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTG 105757 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||||||||| || || | |||||||||||| Sbjct 105758 ATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | || || || | |||| ||| || ||| || || || || || || || Sbjct 113824 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 113883 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | ||| || || || |||||||| | ||| ||||| || || || || || Sbjct 113884 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 113943 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || || ||| ||| || || || | || || | || || || | || Sbjct 113944 TTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTG 114003 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||||||||| || || | |||||||||||| Sbjct 114004 ATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041 >seq22 Length=933496 Score = 138 bits (152), Expect = 2e-27 Identities = 449/699 (64%), Gaps = 7/699 (1%) Strand=Plus/Minus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| || |||||||||| ||| | ||||||| || |||||||| || | || || | Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 ||||| |||||| | ||||||| ||| |||| ||||||| ||| || ||| Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 49775 tatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAAATC 49834 ||| | | | || | | | || | | | | || | || |||||||| Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTGTT--GGA-ACATCAGGCAAGCAAAATC 329623 Query 49835 AGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAA 49894 |||||| || |||||||| || || | |||||| || || || || ||||||| Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 49895 TCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGAC 49954 || | || || |||||||| ||||| |||||||| | | |||||| || || || || Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 49955 ACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--ATATCCAATTT 50012 |||||||||||||| | | | ||||| || || || | | ||||| Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAAG-TTGGCCGATT-TCGATGAAATCCACGCC 329445 Query 50013 ATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCA 50072 | |||||||| || || || | || ||| || | || ||||| || || || | | Sbjct 329444 AGTGCCCAATCAGCCTTGCGCTTAACAGCAGGCATCGTCTCAATAGCATTGAACAAGTAA 329385 Query 50073 tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATGT 50132 | ||| | ||||||| |||||||||||||| Sbjct 329384 TCCCTTTGCTTGCCATCCTTAATATATGTATCAATTAATATGCTGTACATTTCAGAATGC 329325 Query 50133 ACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTCG 50192 ||| ||||| || ||||||||| ||| || | || |||| |||||||| Sbjct 329324 ACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCTGTGATTTGAACTTCT 329265 Query 50193 GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCT 50252 ||| ||||||||||| || ||| ||||||||||| || || || |||||||| Sbjct 329264 TGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAGGCGGCAAAGAATGCC 329205 Query 50253 AAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCG 50312 ||||||| ||| ||||| |||||| || | | | ||||| || | ||| Sbjct 329204 AAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCCCAATCATCCATATCT 329145 Query 50313 TTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 || || | || || ||||| | ||||| || |||||| Sbjct 329144 TTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCT 329106 >seq21746 Length=7614 Score = 129 bits (142), Expect = 1e-24 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| |||||||| | ||||| || || || || | || | ||| ||| || || Sbjct 2433 GTTCAATGATACCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGA-ATG 2375 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || || || || |||| |||||||| || || || || || || | ||| Sbjct 2374 TTGTAGTCGGACAAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGT 2315 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| |||||||| |||||||||||||| |||||| || ||||| |||| || Sbjct 2314 TGATCTGGTGGTATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCA 2255 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || | ||| ||||| || || || | |||||| | || ||||||||| Sbjct 2254 GAAGGCTCGACCTCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATT 2195 Query 192538 TTATT 192542 || || Sbjct 2194 TTGTT 2190 >seq322 Length=316913 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 ||| || || || || | ||||||||||||||||| | |||| || ||||| ||||| | Sbjct 56201 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGA-ATATTGTAATCGG 56259 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| ||||| |||| || ||||| || || || || |||| | ||||||||| || | Sbjct 56260 CTAAGGTTCGCCCATCTTCTAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAG 56319 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| ||||| || |||| || | ||| || | || | Sbjct 56320 GGATCCCTTCCTTGTCTTGAATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAA 56379 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || |||||||| || || || |||| || |||| || || ||||| Sbjct 56380 CCTCAAGAGTAATAGTCTTGCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 ||| || || || || | ||||||||||||||||| | |||| || ||||| ||| | | Sbjct 38760 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGA-ATATTGTAACCGG 38702 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| ||||| |||| ||| ||||||| || || || |||| | ||||||||| || | Sbjct 38701 CTAAGGTTCGCCCATCTTCCTATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGG 38642 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||| | || ||||| ||||| || |||| || | ||| || | || | Sbjct 38641 GGATCCCTCCCTTGTCTTGAATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAA 38582 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || |||||||| || || | |||| || |||| || || ||||| Sbjct 38581 CCTCAAGAGTAATAGTCTTGCGCGTTAGGGTCTTAACGAAAATTTGCAT 38533 >seq4530 Length=49833 Score = 109 bits (120), Expect = 1e-18 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAG 192367 ||| || || || || | ||||||||||||||||| | |||| || ||||| ||| | | Sbjct 18534 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGA-ATATTGTAACCGG 18476 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| ||||| |||| ||| ||||||| || || || |||| | ||||||||| || | Sbjct 18475 CTAAGGTTCGCCCATCTTCCTATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGG 18416 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||| | || ||||| ||||| || |||| || | ||| || | || | Sbjct 18415 GGATCCCTCCCTTGTCTTGAATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAA 18356 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || |||||||| || || | |||| || |||| || || ||||| Sbjct 18355 CCTCAAGAGTAATAGTCTTGCGCGTTAGGGTCTTAACGAAAATTTGCAT 18307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983386774954500