Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq280 140 6e-28 seq21746 125 1e-23 seq322 118 2e-21 seq22 111 3e-19 seq4530 109 1e-18 seq59797 89.7 9e-13 >seq280 Length=341618 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || || |||||||| || |||| || || |||||| || || Sbjct 106250 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 106309 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||| || || ||||| |||||||| | ||||| || ||| Sbjct 106310 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 106369 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || |||||| ||| ||||| || ||||| || | || Sbjct 106370 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 106429 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||||||||| || || ||||| | ||| |||||||| Sbjct 106430 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || || |||||||| || |||| || || |||||| || || Sbjct 114496 ATACCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCA 114555 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||| || || ||||| |||||||| | ||||| || ||| Sbjct 114556 GACAATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGT 114615 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || |||||| ||| ||||| || ||||| || | || Sbjct 114616 GGGATTCCTTCCTTATCCTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCA 114675 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||||||||| || || ||||| | ||| |||||||| Sbjct 114676 ACCTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | |||| ||| || || || ||||| Sbjct 106478 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 106537 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||||||||| || ||||| ||||| | || || || ||| Sbjct 106538 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 106597 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||||||||| |||||||| || | ||| Sbjct 106598 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 106657 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 106658 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | |||| ||| || || || ||||| Sbjct 114724 ATGCCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCG 114783 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||||||||| || ||||| ||||| | || || || ||| Sbjct 114784 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGT 114843 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||||||||| |||||||| || | ||| Sbjct 114844 GGAATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCA 114903 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 114904 ACCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | || ||||| | ||| | || || |||||| || || || Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || |||| ||||| |||||||| |||||||| || | |||||| || || || Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| ||||| || ||||| ||| ||||| || || ||||||| || || Sbjct 104777 ATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACC 104836 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || ||||||||||| || | ||| || | ||| |||||||| Sbjct 104837 TCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || ||||| | |||| ||| || || || || || Sbjct 105110 ATACCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCC 105169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| |||||||||||||| || ||||| || | ||||| || || Sbjct 105170 GACAAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGA 105229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || || || || || || ||||||| || Sbjct 105230 GGAATGCCTTCTTTATCTTGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCA 105289 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || |||||||||||||||| || || | ||| || ||||| Sbjct 105290 ACCTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 >seq21746 Length=7614 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | || || || || || || | || | ||| || ||| || || Sbjct 2428 ATGATACCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAG 2369 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || | || |||||||| || || || ||||| || | ||||| || Sbjct 2368 TCGGACAAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCT 2309 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 |||||||| |||||||||||||| |||||| || ||||| ||||| || || | Sbjct 2308 GGTGGTATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGC 2249 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || || | ||| ||||| || || || | |||||| | ||| ||||||||||| || Sbjct 2248 TCGACCTCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTGTT 2190 >seq322 Length=316913 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || || || || | ||||||||||||||||| || || |||||| ||||| | Sbjct 56201 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAATCGGC 56260 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | ||| | || || ||||| || || || ||||||| | |||||| || || || Sbjct 56261 TAAGGTTCGCCCATCTTCTAATTGCTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGAGG 56320 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| ||||| || |||| || ||||| || | || || Sbjct 56321 GATCCCTTCCTTGTCTTGAATTTTCGCCTTAACATGCTCAATTGTATCCGAAGGCTCAAC 56380 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || || |||| || |||| ||| || ||||| Sbjct 56381 CTCAAGAGTAATAGTCTTGCCCGTTAGGGTCTTAACGAAAATTTGCAT 56428 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || || || || | ||||||||||||||||| || || |||||| ||| | | Sbjct 38760 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGC 38701 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | ||| | || ||| ||||||| || || ||||||| | |||||| || || || Sbjct 38700 TAAGGTTCGCCCATCTTCCTATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGG 38641 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||| | || ||||| ||||| || |||| || ||||| || | || || Sbjct 38640 GATCCCTCCCTTGTCTTGAATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAAC 38581 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || | |||| || |||| ||| || ||||| Sbjct 38580 CTCAAGAGTAATAGTCTTGCGCGTTAGGGTCTTAACGAAAATTTGCAT 38533 >seq22 Length=933496 Score = 111 bits (122), Expect = 3e-19 Identities = 224/330 (68%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| ||||||||||||| ||| | |||||| || |||||||| || | || || | Sbjct 329799 ATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCAATCAAATTCAC 329740 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076 ||||| |||||| | ||||||| ||| |||| ||||||| ||| || ||| Sbjct 329739 AGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCAATGATTTCAAT 329680 Query 39077 tatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATC 39136 ||| | | | || | | | || || | | || | || |||||||| Sbjct 329679 AATACGGTCCCTACTTGGCTTCTGAATGAGGTG-TTGGAACATC--AGGCAAGCAAAATC 329623 Query 39137 CGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAA 39196 |||||| ||||||||||| || || | |||||| || || || || ||||||| Sbjct 329622 GCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCAGGCATTAG 329563 Query 39197 TCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCAC 39256 || | || || |||||||| ||||| |||||||| | | |||||| || || || || Sbjct 329562 GCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATGCCTTCAAC 329503 Query 39257 ACACGCAAATGCTATTATTCTTGCTCCAAA 39286 |||||||||||||| | | | ||||| Sbjct 329502 CGCGGCAAATGCTATTATACGTTCGCCAAA 329473 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39420 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCT 39479 |||||||||||||| ||| ||||| || ||||||||| ||| || | || ||| Sbjct 329339 TACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCT 329280 Query 39480 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 39539 | |||||||| ||| ||||||||||| || ||| ||||||||||| || Sbjct 329279 GTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAG 329220 Query 39540 GCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC 39599 || || |||||||| ||||| | ||| ||||| |||||| || | | | || Sbjct 329219 GCGGCAAAGAATGCCAAAACGTGCGAAATGAAATGGCGTTCATTGTCGGTGAGACGCGCC 329160 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 ||| || | ||| || || | || || ||||| | ||||| || |||||| Sbjct 329159 CAATCATCCATATCTTTGGAAAGGTCAACCTCTTCCACCGTCCAGAAGGATGCT 329106 >seq4530 Length=49833 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || || || || | ||||||||||||||||| || || |||||| ||| | | Sbjct 18534 ACCTCCCCTGAGCCGAAGTACTAAATGTAAAGTAGATTCCTTTTGAATATTGTAACCGGC 18475 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | ||| | || ||| ||||||| || || ||||||| | |||||| || || || Sbjct 18474 TAAGGTTCGCCCATCTTCCTATTGTTTTCCTGCGAAAATTAGGCGCTGTTGATCTGGGGG 18415 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||| | || ||||| ||||| || |||| || ||||| || | || || Sbjct 18414 GATCCCTCCCTTGTCTTGAATTTTTGCCTTCACATGCTCAATTGTATCCGAAGGCTCAAC 18355 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || | |||| || |||| ||| || ||||| Sbjct 18354 CTCAAGAGTAATAGTCTTGCGCGTTAGGGTCTTAACGAAAATTTGCAT 18307 >seq59797 Length=1646 Score = 89.7 bits (98), Expect = 9e-13 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 39471 CTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATA 39530 |||||||||| ||| || ||||| |||||| ||| | || |||||| |||||| Sbjct 1277 CTTGCTTCTGCGAGCTGTACCTCGGAGGAGAATCTTTCGAGTAGGTTCTCATTGACAATA 1218 Query 39531 CCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTT 39590 || |||||||| |||||||||||||| |||| |||| || || || |||| | ||| Sbjct 1217 CCGTCAGATGCGGCGAAGAATGCTAATACATGACTAATGAAGTGCTTCTCATCCTTGTTT 1158 Query 39591 AAATT-TTC--CCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAA 39647 | || ||| ||| | ||| || || || || | ||||||| ||||| ||| Sbjct 1157 ATCTTGTTCTGCCAGTCCGTGATATCCTTCGACAAGTCCATTTCTTCTGCAGTCCAGAAA 1098 Query 39648 GATGCTACGGATTTTTTATA 39667 || ||| | | ||| || || Sbjct 1097 GAAGCTTCTGCTTTCTTGTA 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904155398286000