Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8965 143 8e-29 seq163 136 1e-26 seq5276 131 5e-25 seq79006 96.9 1e-14 seq6739 89.7 2e-12 seq840 89.7 2e-12 >seq8965 Length=25464 Score = 143 bits (158), Expect = 8e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || ||||| ||||||||||| ||||| | | || || | || | ||| || |||| | Sbjct 10420 CCGACAGCGTCAATTTCGTCGATGAATAGAATGCAGGGTGCATGCTTTCTGGCCATTGAA 10361 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| || | || | ||||| ||||||||| || |||||| || Sbjct 10360 AACATATCGCGCACACGTGAAGGGCCTACGCCAACGAACATTTCTAGGAACTCAGAACCG 10301 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| ||| || | |||||| ||||| || ||| |||| |||||| | || ||| Sbjct 10300 GATACGCTAATAAACGGTACATTCGCTTCACCGGCTGTTGCCTTCGCCAACAACGTTTTA 10241 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || ||||||||||| || | | | | |||||||||| || || ||| | || Sbjct 10240 CCAGTTCCAGGTGGACCAGTCAGCATAGCACCCTTTGGTATCTTGGCGCCAAGATCAATA 10181 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| | || | |||||||| | ||| | |||| || |||| ||| ||||| ||| Sbjct 10180 TATTGTTGGGGATTTTTTAAAAAGTTTACGAATTCCATAATTTCAATTTTGGCCTCCTCA 10121 Query 289330 CATCCTGCTACATC 289343 || ||||| ||||| Sbjct 10120 CAACCTGCAACATC 10107 >seq163 Length=433384 Score = 136 bits (150), Expect = 1e-26 Identities = 212/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 |||||| ||| |||| || |||||||| ||||| ||| | || || |||||||| Sbjct 186474 TTCCATTGCCTTTATTAGGCGTCGCTGAATGTAACCCGTTTCTGCAGTCTTCACAGCTGT 186533 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||| |||| || | || || ||||||||||| ||| | | ||| |||| || ||| Sbjct 186534 ATCGATTAATCCTTCGCGTCCGCCCATAGCATGAAAGTAAAACTCGCTCGGTGTTAACCC 186593 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | | ||| |||| ||||||||||| |||||||| || || ||| | || Sbjct 186594 CGCTAGATATGAGTTCTCGACGAAACCACGTGCCTCGGGGCCATAATCATCCTTTATGAA 186653 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||| || | || | | || | || |||||||| || ||||||||||| || Sbjct 186654 ATGGGGCATTGTGCGTTTACGAAAACCAAAAGGTATACGCTTGCCTTCAACGTTCTGTTG 186713 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTAC 302873 || | ||| | |||| ||||| ||||||| | | ||| || || || ||| |||| Sbjct 186714 GCCTACGCAGGCGATCACTTGCGATATATTTATGTTAGAGCCTTTCGAACCGGCAATTAC 186773 Query 302874 CAT 302876 ||| Sbjct 186774 CAT 186776 Score = 91.5 bits (100), Expect = 4e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| || ||| ||||||||| ||||| ||||||||||| ||||||||||| || Sbjct 208791 GCACCGTGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACCACCATCACGC 208850 Query 251545 GCCCTACCCTCGGCAGGCTGACG 251567 ||||||||||| ||| ||||| Sbjct 208851 GCCCTACCCTCCATAGGTTGACG 208873 Score = 89.7 bits (98), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| |||||||| || || || || || || |||||| |||| Sbjct 209210 TGGCCAATTGTCATACGAGATGGAATAGCGTGAGGGTTAATAATAATATCGGGTGCCAGT 209269 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTT-CCAATAGTTCCCTTTTG 251957 || ||| || || | ||| || | || | ||| || | ||| ||| |||||||| Sbjct 209270 CCCTCACATGTAAATGCCATGTCTTCTTGA-CGATACTGGATACCACAAGTACCCTTTTG 209328 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 |||||||| || |||||||||||||| || ||| || ||||| |||| Sbjct 209329 ACCGTGACGTGAGGCAAACTTATCACCAATTTGTGGTATGCGCACCGAACGAACACGAAT 209388 Query 252018 CTTACAGAAGTTGTAACCATCAC 252040 ||||||||| || || || |||| Sbjct 209389 CTTACAGAACTTATAGCCCTCAC 209411 Score = 84.2 bits (92), Expect = 6e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||| ||| ||||||||||||||| ||||| | ||| |||||||||||| Sbjct 208791 GCACCGTGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACCACCATCACGC 208850 Query 233333 GACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | |||||||| | | |||||| | | ||| | || | ||||| | |||||| | | Sbjct 208851 GCCCTACCCTCCATAGGTTGACGTACTAAAATCTGTAC-GGGACCACGGGCACGAGAGTG 208909 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451 || || || | ||||| ||||| || | |||||| || || | ||||| || Sbjct 208910 GATCTTGTCGTCCACCATGTGCTTAAGACGTTGGTAATAAGTAGGTCCTAAAAATACTTG 208969 Query 233452 TGCGTGTAATTGTTC-CCCAGATTCACCGCTGTATAAAACTTCATTACC 233499 || | | ||| | | |||| | ||| |||| | |||||||| || Sbjct 208970 GGCAT-TGATTTTACGGCCAGTATGACCATTGTACATGACTTCATTTCC 209017 >seq5276 Length=43659 Score = 131 bits (144), Expect = 5e-25 Identities = 194/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||||||||||||||||||| || ||||| ||||| ||| Sbjct 33752 TCCATAGCCTTTATGAGACGACGCTGAATATAACCAGTTTCAGCAGTTTTGACAGCAGTA 33811 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| ||||| | | ||| ||| || || Sbjct 33812 TCGATAAGACCTTCACGACCACCCATAGCGTGGAAATAGAATTCTGAAGGTGTTAAGCCG 33871 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | | | || | || ||||| ||||||| ||| || || ||||||| || | Sbjct 33872 GCGAGATACGAATTTTCGACGAAGCCACGCGACTCAGGACCGTAATCGTC---TTTAATG 33928 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || | || | |||||||| ||||| || || || |||||||| Sbjct 33929 AAATGTGGCAATGTGCGCTTACGGAAACCGTATGGTATACGTTTACCCTCGACGTTCTGT 33988 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 33989 TGACCCACACAAGCAATAACCTGTGAGATATT 34020 >seq79006 Length=1134 Score = 96.9 bits (106), Expect = 1e-14 Identities = 92/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| |||||| || |||||| | |||||||| | |||| |||||||||||||| Sbjct 582 AATTTCTTTAATACGTGGTACACCAAGCGTTACGTT---CATGGATGCAACACCAGCAAA 526 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||| || |||| || | ||| ||| || ||||||||| |||||| |||| Sbjct 525 GTGGAATGTTTTCAATGTCATTTGTGTACCAGGTTCACCAATAGATTGTGCACCAAT 469 >seq6739 Length=34555 Score = 89.7 bits (98), Expect = 2e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 251481 AGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATC 251540 ||| | |||||| ||| | ||| ||||||||||||||||| | || | |||||||| Sbjct 23329 AGACGTACCGTGGCCAATTAAACAGTCACGCTCCATTTCACCCACTCGCAAGCCACCATC 23388 Query 251541 GCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCT 251600 || | | || || | ||||| || || || | ||| || ||||||||||| Sbjct 23389 ACGCGAGCGGCCTTCAGTGGGCTGTCGGGTTAGCGAAGTCATCGGTCCGATGGAGCGCGA 23448 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || ||||||| | ||||| ||||| || ||||||||| | ||| |||||| ||| Sbjct 23449 GTGCACCTTATCACTGACCATGTGCTTCAGCCGCTGGTAGTAGATGGGGCCGATGTAGA 23507 >seq840 Length=183542 Score = 89.7 bits (98), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 7/323 (2%) Strand=Plus/Minus Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACC---CTGATCTACATACCG 156082 ||| |||| || || ||||| ||| |||||||||||| ||||| |||||| || Sbjct 95296 TGGTTCCAAGTAAATGGCAAAGGCGCCAGGCCTCTTGCCACCACCCTGATGTACATAACG 95237 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGT-TC 156141 |||| |||||||| || | | ||| || | | |||||| ||||||||||| || | Sbjct 95236 AGCAACGTTATTGAATACCCGCAACATTGGTACCAAACCATTTGAAGTGCCATTTGTGCC 95177 Query 156142 CGCGAATATGC-GAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGAC 156200 ||||| ||| | || || ||| | ||| | || ||||||||| ||||| | Sbjct 95176 CGCGA--TTGCTGTTCCCTTTGCGCGCATGCAATGGACATTTAGTCCAATGCCACCAGCA 95119 Query 156201 CATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCT 156260 | | |||||| ||| |||| | ||| | || ||||| |||||| ||||| | Sbjct 95118 AACTGGGAAATTAAAGCACATTGGTGGGCAGATGTAAATATACCATCAATAAAATCACCA 95059 Query 156261 TCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGT 156320 |||| | | |||| | || || ||||| ||| | | || |||| || ||| Sbjct 95058 GCCATAGTCAATAGAAAACAGGATGACAATTGCGGTTGGCGAGTGGCAGCAGCAAAGAGT 94999 Query 156321 GTAGGTGTTGCATGAATAAAATA 156343 || || | ||||| | ||||| Sbjct 94998 GTTGGAGAGGCATGTGTGAAATA 94976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470183206347790