Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_021343.1
Length=35430
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 232 2e-56
>seq52999
Length=1923
Score = 232 bits (256), Expect = 2e-56
Identities = 853/1315 (65%), Gaps = 51/1315 (4%)
Strand=Plus/Minus
Query 10326 TGCTCATCAGTAAATCTCCACGGTG--CTGCGTGCT---CGGCTGGCACCTTCGAGGGGT 10380
||||||||||||||||||||| || ||||||| || ||| | ||| | || ||
Sbjct 1682 TGCTCATCAGTAAATCTCCACAATGTTCTGCGTGTGTGCCGCCTGTC-CCTGC-AGCGGC 1625
Query 10381 TCGTTATCGAGCGCGTGAAGGCAGGCCCATGCGAGGTCAGCGTGGCCGATTTCTTCGTTA 10440
||||| | |||||||| | | ||||| || | || |||||| || ||| ||| |
Sbjct 1624 TCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCT- 1566
Query 10441 CGCGCGGC-GGTGT---AGGTCATCTTCGTGCCGCTCGGCGTCATGGCTCGGCGGATGGA 10496
||||| ||| | ||||| ||||||| | ||| ||||| |||||| ||
Sbjct 1565 ---GCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGA 1509
Query 10497 CAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTTTTCCCGAT 10556
|| || || ||||||| |||| | ||||| || ||||| ||| | ||||
Sbjct 1508 CATAAATGACTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGAT 1449
Query 10557 CACCGACAT--GCCTTTCAGGACAAGGCGGTTTTTCAC-TTCGGGCGAGTAATTGATCGG 10613
| | | ||||| ||| || ||| ||||||||| |||||| | | |
Sbjct 1448 GGT-GTCGTAAGCCTT-CAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCC 1391
Query 10614 TACGACGCGCGGGAAGAACTGGCGC--ACAAGCTGATGCACGCCGTGACCGATGCCGGTC 10671
| | || |||||||||| ||| ||| || | ||||| | |||| ||||||
Sbjct 1390 TTC-ACCTGCGGGAAGAA--GGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334
Query 10672 GTATCGATCGCGATATAGGTCACGTGGTAGCGCTGCGTCAATTCGCGGATTTTCTCCGCC 10731
| ||||| |||||||||| |||| || ||||||||| | ||| || |||
Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274
Query 10732 TGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTTCCGTTC 10791
|||| |||||| || || ||| | || || || || | ||||| || ||| |
Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214
Query 10792 GGCTGCTCGGGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGG-------- 10843
||| | ||||| || || || ||||| ||||| |||||| | | |
Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154
Query 10844 -CAGGGTCGTAGCCGATCCATACCGGCTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTT 10901
| ||||||||||||||||| || |||||||||||||| || | || || || ||
Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGC-CAGCGCCTC 1095
Query 10902 CACGTCCGTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGA--GCCGGAAGGCG 10959
| ||| ||||| || ||||| || |||||||| ||| | | ||| | ||
Sbjct 1094 AAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGG-- 1037
Query 10960 AACACCGATGAGGTGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGG 11019
|| ||||| | ||||||| || |||||| |||||| | | |||| | |||
Sbjct 1036 AATACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGG 977
Query 11020 CTGTTCGTTGAGCGCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCG-ATGGC 11075
|||| | ||||| | |||||| || ||| || | | | ||| | ||
Sbjct 976 CTGTAGCGCGTGCGCAGCTGCTCCAGGTCAAACAG----GTCACAGCCGCCGCGCACCGC 921
Query 11076 ATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAG 11135
||| || | ||||||||||| || | || ||||| |||| |||| ||| || ||
Sbjct 920 ATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAG 861
Query 11136 CGACGTATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGTC 11195
||| |||| | ||| || || || || || | | || ||| | |||||| |
Sbjct 860 TGACTGATGGCTGAGGTCAATATCAACCCGGTCAGCTTTGGCCCGGCCCTTGTTGAACTG 801
Query 11196 CGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGT 11255
|| || | ||| |||| |||||| |||||| |||| || || || |||| ||
Sbjct 800 CGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGT 741
Query 11256 CATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTT 11315
||| | | | ||| |||||| || ||| || || | |||||| ||||||
Sbjct 740 TTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTT 681
Query 11316 GCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGA 11375
|| ||||||||| ||||| | ||||| | ||||| ||||| || || ||||| |
Sbjct 680 CGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGC 621
Query 11376 ACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGTTAG 11435
||||||| || ||| || ||||||||| | | |||||| ||||| | ||
Sbjct 620 GTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAG 561
Query 11436 CTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGTGCCTG 11495
|| || | | | || | ||||||| ||| ||| ||| ||||| |||||
Sbjct 560 GTCTACGTCCACCTCG---CGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTG 504
Query 11496 TGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAGTGC 11555
|| || || || || || |||||||| ||||| |||||| | || ||
Sbjct 503 CGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGC 444
Query 11556 CTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGG 11610
|||| | || ||| |||| ||||| || ||||| || |||||||| | |||||||
Sbjct 443 CTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGG 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113137837863680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |