Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq52999 232 2e-56 >seq52999 Length=1923 Score = 232 bits (256), Expect = 2e-56 Identities = 853/1315 (65%), Gaps = 51/1315 (4%) Strand=Plus/Minus Query 10326 TGCTCATCAGTAAATCTCCACGGTG--CTGCGTGCT---CGGCTGGCACCTTCGAGGGGT 10380 ||||||||||||||||||||| || ||||||| || ||| | ||| | || || Sbjct 1682 TGCTCATCAGTAAATCTCCACAATGTTCTGCGTGTGTGCCGCCTGTC-CCTGC-AGCGGC 1625 Query 10381 TCGTTATCGAGCGCGTGAAGGCAGGCCCATGCGAGGTCAGCGTGGCCGATTTCTTCGTTA 10440 ||||| | |||||||| | | ||||| || | || |||||| || ||| ||| | Sbjct 1624 TCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCT- 1566 Query 10441 CGCGCGGC-GGTGT---AGGTCATCTTCGTGCCGCTCGGCGTCATGGCTCGGCGGATGGA 10496 ||||| ||| | ||||| ||||||| | ||| ||||| |||||| || Sbjct 1565 ---GCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGA 1509 Query 10497 CAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTTTTCCCGAT 10556 || || || ||||||| |||| | ||||| || ||||| ||| | |||| Sbjct 1508 CATAAATGACTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGAT 1449 Query 10557 CACCGACAT--GCCTTTCAGGACAAGGCGGTTTTTCAC-TTCGGGCGAGTAATTGATCGG 10613 | | | ||||| ||| || ||| ||||||||| |||||| | | | Sbjct 1448 GGT-GTCGTAAGCCTT-CAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCC 1391 Query 10614 TACGACGCGCGGGAAGAACTGGCGC--ACAAGCTGATGCACGCCGTGACCGATGCCGGTC 10671 | | || |||||||||| ||| ||| || | ||||| | |||| |||||| Sbjct 1390 TTC-ACCTGCGGGAAGAA--GGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334 Query 10672 GTATCGATCGCGATATAGGTCACGTGGTAGCGCTGCGTCAATTCGCGGATTTTCTCCGCC 10731 | ||||| |||||||||| |||| || ||||||||| | ||| || ||| Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274 Query 10732 TGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTTCCGTTC 10791 |||| |||||| || || ||| | || || || || | ||||| || ||| | Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214 Query 10792 GGCTGCTCGGGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGG-------- 10843 ||| | ||||| || || || ||||| ||||| |||||| | | | Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154 Query 10844 -CAGGGTCGTAGCCGATCCATACCGGCTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTT 10901 | ||||||||||||||||| || |||||||||||||| || | || || || || Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGC-CAGCGCCTC 1095 Query 10902 CACGTCCGTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGA--GCCGGAAGGCG 10959 | ||| ||||| || ||||| || |||||||| ||| | | ||| | || Sbjct 1094 AAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGG-- 1037 Query 10960 AACACCGATGAGGTGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGG 11019 || ||||| | ||||||| || |||||| |||||| | | |||| | ||| Sbjct 1036 AATACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGG 977 Query 11020 CTGTTCGTTGAGCGCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCG-ATGGC 11075 |||| | ||||| | |||||| || ||| || | | | ||| | || Sbjct 976 CTGTAGCGCGTGCGCAGCTGCTCCAGGTCAAACAG----GTCACAGCCGCCGCGCACCGC 921 Query 11076 ATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAG 11135 ||| || | ||||||||||| || | || ||||| |||| |||| ||| || || Sbjct 920 ATCTTCAACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAG 861 Query 11136 CGACGTATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGTC 11195 ||| |||| | ||| || || || || || | | || ||| | |||||| | Sbjct 860 TGACTGATGGCTGAGGTCAATATCAACCCGGTCAGCTTTGGCCCGGCCCTTGTTGAACTG 801 Query 11196 CGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGT 11255 || || | ||| |||| |||||| |||||| |||| || || || |||| || Sbjct 800 CGAACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGT 741 Query 11256 CATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTT 11315 ||| | | | ||| |||||| || ||| || || | |||||| |||||| Sbjct 740 TTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTT 681 Query 11316 GCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGA 11375 || ||||||||| ||||| | ||||| | ||||| ||||| || || ||||| | Sbjct 680 CGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGC 621 Query 11376 ACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGTTAG 11435 ||||||| || ||| || ||||||||| | | |||||| ||||| | || Sbjct 620 GTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTGAGCGTCATCGGGTCGCCCTTCAG 561 Query 11436 CTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGTGCCTG 11495 || || | | | || | ||||||| ||| ||| ||| ||||| ||||| Sbjct 560 GTCTACGTCCACCTCG---CGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTG 504 Query 11496 TGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAGTGC 11555 || || || || || || |||||||| ||||| |||||| | || || Sbjct 503 CGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGC 444 Query 11556 CTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGG 11610 |||| | || ||| |||| ||||| || ||||| || |||||||| | ||||||| Sbjct 443 CTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGG 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113137837863680