Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_021774.1
Length=29742
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 513 3e-141
>seq52999
Length=1923
Score = 513 bits (568), Expect = 3e-141
Identities = 1038/1533 (68%), Gaps = 29/1533 (2%)
Strand=Plus/Minus
Query 1229 AGCGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGACTGGCCTCC 1288
||||| |||||| ||| ||||||||||| ||||| || | ||| |||| ||| | |||
Sbjct 1630 AGCGGCTCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCC 1571
Query 1289 TCGNNNNNNNNNNNNNNNNNNNNNNNGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATG 1348
||| | | |||||| || ||| |||||||||
Sbjct 1570 TCGCTGCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATA 1511
Query 1349 GACATAAACGACTGTGTGACGTC-AGTTGCACCGGCGTCGTACTCCAGACAGCCAC-GGC 1406
|||||||| ||||| | || ||| || || | |||||| ||||||| | || | |||
Sbjct 1510 GACATAAATGACTGCGCGATGTCGAGGTGG-CTGGCGTCAAACTCCAGCCGCCCGCTGGC 1452
Query 1407 GAATCGTGTCTTTCGCCTTGAGTACCATTGCGGTTTTCATTTCTGGCGTGTA-ACGGATA 1465
|| | ||||| | ||||| || |||| ||| |||||| | || | || || |
Sbjct 1451 GA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACT 1393
Query 1466 CCGCGAGCCGCCGGGTAGAATGAGCGCACCAACTGGAATACGCCGAGACCGAGGCCGGTC 1525
|| | | || ||| |||| | || || | ||||||| || |||| ||||||
Sbjct 1392 CCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334
Query 1526 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCC 1585
| ||| |||||||| || |||||| || | || || ||| | | |||| | || |||
Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274
Query 1586 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 1645
||||| |||||||| || ||||||||||||||| || ||||| |||||||| |||
Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214
Query 1646 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCAGTGTGGGAC------ 1699
| || | ||||| || | || || |||||||| |||||||| | || |
Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154
Query 1700 ---GGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAACGGGTGGTCGGCGAACGGGGCG 1756
||||||||||| ||||| || | ||||||||||| | || | || |
Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCA 1094
Query 1757 AAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAAT 1816
||||| ||| |||| ||| |||||||| ||||||| | | | |||||
Sbjct 1093 AAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAAT 1034
Query 1817 ACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTG 1876
||||| ||| |||||| | ||| ||||||| | |||||||| | ||||| |||
Sbjct 1033 ACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTG 974
Query 1877 TTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTC 1935
| ||||| | ||||| || ||||| |||||| ||||| ||| | || || ||
Sbjct 973 TAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTC 915
Query 1936 AATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCT 1995
|| ||||| ||||| || |||| ||||| |||| || | || |||| || | ||
Sbjct 914 AACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGA-CT 856
Query 1996 G-TGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCT 2054
| || |||| ||| || || | |||||||| |||| || |||||||||||| ||
Sbjct 855 GATGGCTGAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCG 799
Query 2055 CGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTG 2114
|| |||||||| ||||| |||| ||||| || |||| || || |||||||| |||
Sbjct 798 AACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTT 739
Query 2115 AGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCG 2174
|||| | ||| ||| |||||||| || || ||||| |||| | |||||| ||||
Sbjct 738 CGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCG 679
Query 2175 GGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTTTGTGCGGTGTTGGAAT 2234
|||||||||| |||||| | ||||| | ||||| || ||| || |||||| || |
Sbjct 678 GGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGT 619
Query 2235 TGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATAACAATCGGGTCGCCGGTCA 2294
||||||| || ||| ||| || || ||| | || ||||||||||| |||
Sbjct 618 TGGTGCCCAGGAAATACAGGCACGCACC---GTTACTGAGCGTCATCGGGTCGCCCTTCA 562
Query 2295 GGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCG 2354
|||| ||||| ||| || ||||| | |||||||| | | ||| |||| |||||||
Sbjct 561 GGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCG 502
Query 2355 TTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCT 2414
|||||||| || || || ||||| || | ||||| | ||||| | ||| ||||
Sbjct 501 CCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCT 442
Query 2415 CGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGT 2474
|||||| ||| |||| || || ||||||||||| || || || | | ||| ||||
Sbjct 441 CGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCG--GACGGA 384
Query 2475 GCGCCAGT--CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAAT 2532
| | | || ||| ||||||| |||||| |||| | | || |||||
Sbjct 383 GTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAAC 324
Query 2533 TTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCTC 2592
|| | |||||| | | || |||||||| | |||||||| ||| |||||||
Sbjct 323 CTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG 264
Query 2593 CCCTTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTA 2652
|| ||||| ||||| | ||||| || || ||||| || || |||||| | |||| |
Sbjct 263 GCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAA 204
Query 2653 GCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTC 2712
| || || || | ||||| ||||||| | |||||||| || || ||||||||
Sbjct 203 TTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144
Query 2713 GCCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 2745
||| ||| ||| ||| |||||||||
Sbjct 143 CTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 94954971064160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |