Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq52999 513 3e-141 >seq52999 Length=1923 Score = 513 bits (568), Expect = 3e-141 Identities = 1038/1533 (68%), Gaps = 29/1533 (2%) Strand=Plus/Minus Query 1229 AGCGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGACTGGCCTCC 1288 ||||| |||||| ||| ||||||||||| ||||| || | ||| |||| ||| | ||| Sbjct 1630 AGCGGCTCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCC 1571 Query 1289 TCGNNNNNNNNNNNNNNNNNNNNNNNGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATG 1348 ||| | | |||||| || ||| ||||||||| Sbjct 1570 TCGCTGCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATA 1511 Query 1349 GACATAAACGACTGTGTGACGTC-AGTTGCACCGGCGTCGTACTCCAGACAGCCAC-GGC 1406 |||||||| ||||| | || ||| || || | |||||| ||||||| | || | ||| Sbjct 1510 GACATAAATGACTGCGCGATGTCGAGGTGG-CTGGCGTCAAACTCCAGCCGCCCGCTGGC 1452 Query 1407 GAATCGTGTCTTTCGCCTTGAGTACCATTGCGGTTTTCATTTCTGGCGTGTA-ACGGATA 1465 || | ||||| | ||||| || |||| ||| |||||| | || | || || | Sbjct 1451 GA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACT 1393 Query 1466 CCGCGAGCCGCCGGGTAGAATGAGCGCACCAACTGGAATACGCCGAGACCGAGGCCGGTC 1525 || | | || ||| |||| | || || | ||||||| || |||| |||||| Sbjct 1392 CCTTCACCTGC-GGGAAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTG 1334 Query 1526 GCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCC 1585 | ||| |||||||| || |||||| || | || || ||| | | |||| | || ||| Sbjct 1333 GAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCC 1274 Query 1586 TGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCC 1645 ||||| |||||||| || ||||||||||||||| || ||||| |||||||| ||| Sbjct 1273 TGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCC 1214 Query 1646 GAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCAGTGTGGGAC------ 1699 | || | ||||| || | || || |||||||| |||||||| | || | Sbjct 1213 GGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTC 1154 Query 1700 ---GGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAACGGGTGGTCGGCGAACGGGGCG 1756 ||||||||||| ||||| || | ||||||||||| | || | || | Sbjct 1153 GCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCA 1094 Query 1757 AAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAAT 1816 ||||| ||| |||| ||| |||||||| ||||||| | | | ||||| Sbjct 1093 AAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAAT 1034 Query 1817 ACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTG 1876 ||||| ||| |||||| | ||| ||||||| | |||||||| | ||||| ||| Sbjct 1033 ACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTG 974 Query 1877 TTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTC 1935 | ||||| | ||||| || ||||| |||||| ||||| ||| | || || || Sbjct 973 TAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTC 915 Query 1936 AATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCT 1995 || ||||| ||||| || |||| ||||| |||| || | || |||| || | || Sbjct 914 AACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGA-CT 856 Query 1996 G-TGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGGCGCGCCCCTTGTTGAACAGCT 2054 | || |||| ||| || || | |||||||| |||| || |||||||||||| || Sbjct 855 GATGGCTGAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCG 799 Query 2055 CGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTG 2114 || |||||||| ||||| |||| ||||| || |||| || || |||||||| ||| Sbjct 798 AACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTT 739 Query 2115 AGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCG 2174 |||| | ||| ||| |||||||| || || ||||| |||| | |||||| |||| Sbjct 738 CGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCG 679 Query 2175 GGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTTTGTGCGGTGTTGGAAT 2234 |||||||||| |||||| | ||||| | ||||| || ||| || |||||| || | Sbjct 678 GGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGT 619 Query 2235 TGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATAACAATCGGGTCGCCGGTCA 2294 ||||||| || ||| ||| || || ||| | || ||||||||||| ||| Sbjct 618 TGGTGCCCAGGAAATACAGGCACGCACC---GTTACTGAGCGTCATCGGGTCGCCCTTCA 562 Query 2295 GGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCG 2354 |||| ||||| ||| || ||||| | |||||||| | | ||| |||| ||||||| Sbjct 561 GGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCG 502 Query 2355 TTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCT 2414 |||||||| || || || ||||| || | ||||| | ||||| | ||| |||| Sbjct 501 CCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCT 442 Query 2415 CGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGT 2474 |||||| ||| |||| || || ||||||||||| || || || | | ||| |||| Sbjct 441 CGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCG--GACGGA 384 Query 2475 GCGCCAGT--CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAAT 2532 | | | || ||| ||||||| |||||| |||| | | || ||||| Sbjct 383 GTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAAC 324 Query 2533 TTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCTC 2592 || | |||||| | | || |||||||| | |||||||| ||| ||||||| Sbjct 323 CTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGG 264 Query 2593 CCCTTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTA 2652 || ||||| ||||| | ||||| || || ||||| || || |||||| | |||| | Sbjct 263 GCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAA 204 Query 2653 GCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTC 2712 | || || || | ||||| ||||||| | |||||||| || || |||||||| Sbjct 203 TTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144 Query 2713 GCCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 2745 ||| ||| ||| ||| ||||||||| Sbjct 143 CTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94954971064160