Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq6451 123 2e-23
seq280 87.8 1e-12
>seq6
Length=1101701
Score = 134 bits (148), Expect = 1e-26
Identities = 164/222 (74%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|| || |||| ||| ||||| ||||||| |||||| ||||||||||| ||||| || ||
Sbjct 806902 TTATAGTCGAACTGGGTTTGAGCGCCCAACTCGCAGCCGAAGTACTTGGTCGGATAGGTG 806843
Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549
|| || ||||| | |||| | || | ||||| ||| ||||| || || ||||| ||||
Sbjct 806842 GCGGGGCGTCCGATGGCGCGT--GCCACTTCGGCCATATTGACAATTACGGTCTTAATGC 806785
Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
| ||||| || || |||||||| || | || ||||||||||| |||||||| ||
Sbjct 806784 CATTGCCTTTGCCCTCGACCTTAGCCTGCAACCGTGGCATTTTGTAACGGTAGAAAATGT 806725
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTG 34651
| | ||| | || || || || || | ||||| | ||||
Sbjct 806724 CGGTGACACTCCGATTCACATTGACGGAACCCATTTTTGCTG 806683
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263
||||| || |||| ||||| || || | |||||| || | ||| || || ||
Sbjct 807481 GGCGGATTCTTCAAAATGAATGTATTCACCTTATGGTTGACCTTTAGGAGTCCATGGAAA 807422
Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323
||||| |||||||| ||| | || | | || |||| || | | | | ||||||
Sbjct 807421 CCGCAAGCTTTGCACGACTGCGAAATGGTTTGATTCCTAGCTGAGATGGTCAAATCAGTC 807362
Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383
|| || || || |||||||||||||| || | ||||| ||||| || || || || |||
Sbjct 807361 TCAGGATTATCGCATTCCGGACACAAGACGTATTTGCGTATGAAGCCGTCGAGTAGATCC 807302
Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
|| ||||| || || || || || ||||| ||||| || |||||
Sbjct 807301 TGCAACTTGCTGGCATCATGCGAACCATTGACAATGAAACGCTCGTT 807255
>seq6451
Length=36016
Score = 123 bits (136), Expect = 2e-23
Identities = 114/143 (80%), Gaps = 6/143 (4%)
Strand=Plus/Minus
Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563
|| || ||||| || ||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 7653 AGAGCTTTGGCAATCTCGACCATGTTGACGATGACCGTCTTGATGCCGTTGCCCTTGCCC 7594
Query 34564 TCGACCTTGGCGCAGATGCGC---GGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620
||||||||||| ||| || ||||| ||||||||||||||| ||| | | ||||
Sbjct 7593 TCGACCTTGGCC---ATGAGCTTGGGCATCTTGTAGCGGTAGAACTGGTCGGTGAGATTG 7537
Query 34621 CGGTTAACGTTCACAGTCCCCAT 34643
|| || ||||| || |||||||
Sbjct 7536 CGATTCACGTTGACGCTCCCCAT 7514
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380
|||||||||||||| || | |||| ||| |||| |||||| || || ||||||
Sbjct 7924 GTCTCCGGGTTGTCGCAGGAGGCGCACAGCACGTACTTCTTGATGAAGCCGTCCAGCAGG 7865
Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440
||||| | ||| | |||||||| || |||||||| ||| | || ||||| || |||
Sbjct 7864 TCCTGCAGCTTCGCCGAGTCGTGAGATCCGTTGACTATGTAGCGCTCGTTCTTCACGTCG 7805
Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484
| | || ||||| || |||| || |||||||| || ||
Sbjct 7804 CAGTTCACCTGGGCGCCGAGGACGCAGCCAAAGTACTTGGTTGG 7761
>seq280
Length=341618
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||||||||| || || |||||||| || | || |||||| |
Sbjct 106479 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 106420
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || ||| || ||| || || ||||| | || ||||||
Sbjct 106419 GATACCATTGAGAATGTCAAAGCTAAAATTCAGGATAAGGAAGGAATCCCACCAGATCAA 106360
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | | |||| || || || ||| ||||||||| | ||| || | || |||||
Sbjct 106359 CAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAAT 106300
Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475
||||| || |||||||| |||||
Sbjct 106299 ATTCAGAAGGAATCTACATTGCA 106277
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||||||||| || || |||||||| || | || |||||| |
Sbjct 114725 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 114666
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | || ||| || ||| || || ||||| | || ||||||
Sbjct 114665 GATACCATTGAGAATGTCAAAGCTAAAATTCAGGATAAGGAAGGAATCCCACCAGATCAA 114606
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | | |||| || || || ||| ||||||||| | ||| || | || |||||
Sbjct 114605 CAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAAT 114546
Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475
||||| || |||||||| |||||
Sbjct 114545 ATTCAGAAGGAATCTACATTGCA 114523
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||||||||| ||||| || || ||||||||||| || | || || ||| |
Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| ||| | || ||| || || || || ||||| | || ||||||
Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | || | || || || ||||| || |||| | | || || | ||||| |||
Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072
Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475
|| |||||||| ||||| ||||
Sbjct 106071 ATACAAAAAGAGTCTACCCTGCA 106049
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||||||||| ||||| || || ||||||||||| || | || || ||| |
Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| ||| | || ||| || || || || ||||| | || ||||||
Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | || | || || || ||||| || |||| | | || || | ||||| |||
Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318
Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475
|| |||||||| ||||| ||||
Sbjct 114317 ATACAAAAAGAGTCTACCCTGCA 114295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412405519288310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |