Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 seq6451 123 2e-23 seq280 87.8 1e-12 >seq6 Length=1101701 Score = 134 bits (148), Expect = 1e-26 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || || |||| ||| ||||| ||||||| |||||| ||||||||||| ||||| || || Sbjct 806902 TTATAGTCGAACTGGGTTTGAGCGCCCAACTCGCAGCCGAAGTACTTGGTCGGATAGGTG 806843 Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 || || ||||| | |||| | || | ||||| ||| ||||| || || ||||| |||| Sbjct 806842 GCGGGGCGTCCGATGGCGCGT--GCCACTTCGGCCATATTGACAATTACGGTCTTAATGC 806785 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 | ||||| || || |||||||| || | || ||||||||||| |||||||| || Sbjct 806784 CATTGCCTTTGCCCTCGACCTTAGCCTGCAACCGTGGCATTTTGTAACGGTAGAAAATGT 806725 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTG 34651 | | ||| | || || || || || | ||||| | |||| Sbjct 806724 CGGTGACACTCCGATTCACATTGACGGAACCCATTTTTGCTG 806683 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 ||||| || |||| ||||| || || | |||||| || | ||| || || || Sbjct 807481 GGCGGATTCTTCAAAATGAATGTATTCACCTTATGGTTGACCTTTAGGAGTCCATGGAAA 807422 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| |||||||| ||| | || | | || |||| || | | | | |||||| Sbjct 807421 CCGCAAGCTTTGCACGACTGCGAAATGGTTTGATTCCTAGCTGAGATGGTCAAATCAGTC 807362 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 || || || || |||||||||||||| || | ||||| ||||| || || || || ||| Sbjct 807361 TCAGGATTATCGCATTCCGGACACAAGACGTATTTGCGTATGAAGCCGTCGAGTAGATCC 807302 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || ||||| || || || || || ||||| ||||| || ||||| Sbjct 807301 TGCAACTTGCTGGCATCATGCGAACCATTGACAATGAAACGCTCGTT 807255 >seq6451 Length=36016 Score = 123 bits (136), Expect = 2e-23 Identities = 114/143 (80%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 || || ||||| || ||| ||||||||||||||| |||||||||||||||||||| || Sbjct 7653 AGAGCTTTGGCAATCTCGACCATGTTGACGATGACCGTCTTGATGCCGTTGCCCTTGCCC 7594 Query 34564 TCGACCTTGGCGCAGATGCGC---GGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 ||||||||||| ||| || ||||| ||||||||||||||| ||| | | |||| Sbjct 7593 TCGACCTTGGCC---ATGAGCTTGGGCATCTTGTAGCGGTAGAACTGGTCGGTGAGATTG 7537 Query 34621 CGGTTAACGTTCACAGTCCCCAT 34643 || || ||||| || ||||||| Sbjct 7536 CGATTCACGTTGACGCTCCCCAT 7514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||||||||| || | |||| ||| |||| |||||| || || |||||| Sbjct 7924 GTCTCCGGGTTGTCGCAGGAGGCGCACAGCACGTACTTCTTGATGAAGCCGTCCAGCAGG 7865 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| | |||||||| || |||||||| ||| | || ||||| || ||| Sbjct 7864 TCCTGCAGCTTCGCCGAGTCGTGAGATCCGTTGACTATGTAGCGCTCGTTCTTCACGTCG 7805 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 | | || ||||| || |||| || |||||||| || || Sbjct 7804 CAGTTCACCTGGGCGCCGAGGACGCAGCCAAAGTACTTGGTTGG 7761 >seq280 Length=341618 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || |||||||| || | || |||||| | Sbjct 106479 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 106420 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| || || ||||| | || |||||| Sbjct 106419 GATACCATTGAGAATGTCAAAGCTAAAATTCAGGATAAGGAAGGAATCCCACCAGATCAA 106360 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || || ||| ||||||||| | ||| || | || ||||| Sbjct 106359 CAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAAT 106300 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| ||||| Sbjct 106299 ATTCAGAAGGAATCTACATTGCA 106277 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || |||||||| || | || |||||| | Sbjct 114725 ATGCAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCC 114666 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| || || ||||| | || |||||| Sbjct 114665 GATACCATTGAGAATGTCAAAGCTAAAATTCAGGATAAGGAAGGAATCCCACCAGATCAA 114606 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || || ||| ||||||||| | ||| || | || ||||| Sbjct 114605 CAACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAAT 114546 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| ||||| Sbjct 114545 ATTCAGAAGGAATCTACATTGCA 114523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| ||||| || || ||||||||||| || | || || ||| | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || || || || ||||| | || |||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||||| || |||| | | || || | ||||| ||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || |||||||| ||||| |||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCA 106049 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| ||||| || || ||||||||||| || | || || ||| | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || || || || ||||| | || |||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||||| || |||| | | || || | ||||| ||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || |||||||| ||||| |||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCA 114295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412405519288310