Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq76387 143 2e-29 seq28390 143 2e-29 seq2574 116 2e-21 seq280 111 1e-19 >seq76387 Length=1185 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| |||| ||||||||| ||||| || ||||| ||| |||| | || Sbjct 777 AGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCC 836 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| |||||||| || || |||||||| | || | ||||||||||| Sbjct 837 TCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 896 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | ||| |||| Sbjct 897 TGGATCTTCGCCTTCAC--ATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGG 954 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || ||||||||||| ||||||||||||||| Sbjct 955 TCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 989 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| |||||| || ||||| |||||||| ||| ||||| | || Sbjct 204 AGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 263 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 264 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 323 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || ||| ||| || || | || || | Sbjct 324 TGGATCTTCGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCG 381 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||||||| || ||||||||||| Sbjct 382 TCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || ||||| ||||| ||| |||| | || || |||||||| || ||||||| Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | || || |||||||| | || | ||||||||||| | || || || || || Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCAC--ATT 688 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | || ||| ||| || || | || || ||||| || ||||||||||| || Sbjct 689 CTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAAC 748 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 749 GAAGATCTGCAT 760 >seq28390 Length=4902 Score = 143 bits (158), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| || || |||||||| ||| |||| | || Sbjct 519 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCC 460 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 459 TCGAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 400 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| || || || || |||| ||| || |||||| || | ||| |||| Sbjct 399 TGGATCTTTGCCTTCAC--ATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGG 342 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| |||||||||||||| |||||||| |||||| Sbjct 341 TCTTGCCCGTGAGGGTCTTCACAAAGATTTGCATG 307 >seq2574 Length=80092 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || | || | || || || ||||| |||||||||| Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| |||||||| |||| | ||||||||||| | || || || || || Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATT 58977 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | || ||| ||| || || | ||| |||||||| |||||||||||||| || Sbjct 58978 CTCGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 59037 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 59038 GAAGATCTGCAT 59049 >seq280 Length=341618 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | || | ||| |||| ||| | || |||||| || ||||| ||||| | Sbjct 105567 TTCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGG 105626 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| || |||||||| ||||||||||| | || ||||| ||| | | Sbjct 105627 ACAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 105686 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || ||||||| | || | || | ||| | Sbjct 105687 GAATACCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAA 105746 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || ||||| || || || |||||||| ||||| |||||||| Sbjct 105747 CCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | || | ||| |||| ||| | || |||||| || ||||| ||||| | Sbjct 113813 TTCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGG 113872 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| || |||||||| ||||||||||| | || ||||| ||| | | Sbjct 113873 ACAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAG 113932 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || ||||||| | || | || | ||| | Sbjct 113933 GAATACCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAA 113992 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || ||||| || || || |||||||| ||||| |||||||| Sbjct 113993 CCTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | ||| |||||| || ||||| |||||||| | | ||||| | || Sbjct 105355 CAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCCGTC 105414 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || || |||| |||||||||||| | || | || |||||||| Sbjct 105415 TTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTC 105474 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | | || | || | ||| || || | |||||| || Sbjct 105475 TTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTATAGT 105534 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 105535 TTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| || ||||| ||||| || | | |||| |||| Sbjct 105811 CAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 105870 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||||||||||| || ||||| ||| | || | || ||||| || Sbjct 105871 TTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATC 105930 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| || | | || | || | ||| || || | ||| || || Sbjct 105931 TTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGT 105990 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 105991 TTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | || |||||| || ||||| ||||| || | | |||| |||| Sbjct 114057 CAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 114116 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || ||||||||||||| || ||||| ||| | || | || ||||| || Sbjct 114117 TTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTTATC 114176 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| || | | || | || | ||| || || | ||| || || Sbjct 114177 TTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGATAGT 114236 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 114237 TTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325348773748730