Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq52999 637 1e-178 >seq52999 Length=1923 Score = 637 bits (706), Expect = 1e-178 Identities = 1256/1829 (69%), Gaps = 63/1829 (3%) Strand=Plus/Minus Query 997 ATCGGGGAGCTGTGATGCACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 1056 || || ||||||||||||||||| || || | | ||||| ||| || ||| || Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 1057 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGA 1116 ||||| |||||||| | | || | | |||||| ||||| ||||| | || ||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 1117 TCGAGTACCGGCACCGGCTCACCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 1176 || || ||||| | ||| || |||||||| || |||||| || || | | |||| Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732 Query 1177 ATTGTTTT-----TGCCGCT--GGTCGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAG 1226 || ||| | ||| || || ||| | | | | || | | ||||||||||| Sbjct 1731 AT-GTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAG 1673 Query 1227 TAAAACTCCAGAATGGTGGATGTCAGCG-GAGTGCTGATACCGGCGGTG-AGTGGCTCAT 1284 |||| ||||| |||| | | ||| | |||| | | | | || || ||||| | Sbjct 1672 TAAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGT 1621 Query 1285 TTAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGC 1344 || ||| |||||||||||||||||||| | ||| |||||||| ||||||||||||||| Sbjct 1620 TTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGC 1561 Query 1345 TGGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACG 1404 ||| |||||||| | | | |||||| || ||| |||||||||| |||||| | Sbjct 1560 TGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATG 1501 Query 1405 AGCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATAACGTCT 1463 | ||| | ||||||| | |||| ||||| | ||||| | || | | ||| ||| Sbjct 1500 A-CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCG 1442 Query 1464 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGCGCG-GC 1522 | ||||| ||||||| ||| |||||| | ||| | ||| | || | | || Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGC 1382 Query 1523 GGGATAGAACGAGCGCACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAATCCC 1582 |||| |||| | || || | | || || | |||| |||||||| || || || Sbjct 1381 GGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCC 1323 Query 1583 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGGCAAA 1642 ||| || |||||| || | | || || | | ||||| || ||||| | || Sbjct 1322 GATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAA 1263 Query 1643 GTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACCACCGG 1702 |||||| || |||||||||||| |||||||| | ||| ||||| || | ||| | || Sbjct 1262 GTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGG 1203 Query 1703 CGGTGCCAGCACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTA 1753 |||||||| ||||||||||||||||||||||| | | || | |||||||| Sbjct 1202 CGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTA 1143 Query 1754 ACCAATCCATACCGGGCGGGAGCCGAACGGATTTGCG----GCAAACGGCGCATAGTCTT 1809 || ||||| || |||||||||| ||| || | || | || |||| Sbjct 1142 GCCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGG 1087 Query 1810 CCCATTCTTCC-AGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAACGGGAACACCGAC 1868 ||| ||||| ||| |||| ||||| || |||||| | | | |||| |||||| Sbjct 1086 TCCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC 1028 Query 1869 GCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCG 1928 ||| ||||| | ||| | ||||| | |||||| | |||| || | ||||| || Sbjct 1027 GCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CG 969 Query 1929 CGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGT 1987 ||| | |||||||| | ||| ||||| |||||||| || || || |||| ||| Sbjct 968 CGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGT 909 Query 1988 GACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACT 2047 ||| ||||| || |||||||||| | ||||| | || |||| || | | ||| || Sbjct 908 GACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCT 849 Query 2048 GACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGA 2107 || ||| || || || || || || |||| || ||| ||||||| | ||| || Sbjct 848 GAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGA 792 Query 2108 CCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGATCGCAG 2167 ||||||||| |||||| ||||| || ||||||||||||| || ||||| |||| Sbjct 791 CCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTT--TCGC-- 736 Query 2168 GTGACTC--TGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA 2223 | ||| |||| || ||||| || || ||||| || ||||| ||||||| ||||||| Sbjct 735 GCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGA 676 Query 2224 TCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGG 2283 |||||||| ||||| | |||||| | ||||| || |||||| |||||| || ||||| Sbjct 675 TCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGG 616 Query 2284 TGCCGAGAAAAATCAGTTTTGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGT 2343 |||| || ||| ||| ||||||||| || | | || ||||||| || |||||| Sbjct 615 TGCCCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGT 559 Query 2344 CAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTT 2403 | ||||| ||| |||||||| | |||||||| | ||| || | |||||||| | Sbjct 558 CTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCT 499 Query 2404 TACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGC 2463 ||||||| || || || ||||| || | ||||| |||| || | ||||||||||| Sbjct 498 TACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGC 439 Query 2464 GGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGTGCT 2523 ||| |||| | || || || ||||||||||| || ||||| | | ||||| | || || Sbjct 438 GGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACT 379 Query 2524 CAAGCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCT 2583 | |||||| |||| || ||| || |||| | | ||||| || || Sbjct 378 TATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCT 319 Query 2584 CCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCGCCTT 2643 |||||| || || ||||| ||||| | ||||||| ||| |||| ||| | Sbjct 318 GCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCT 259 Query 2644 TGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAGCGGT 2703 |||||||||| | ||||||||||| ||||| || || |||||| | ||| | | Sbjct 258 TGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGC 199 Query 2704 TTACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGC 2763 | ||| || | || || ||| || | |||||||| |||||||||||||| | Sbjct 198 CGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTC 139 Query 2764 CGGTTTTCTGCGGTTTGATGATGAGCTGG 2792 | |||||| || |||||||||||| Sbjct 138 CTTCCTTCTGCTCCTTCATGATGAGCTGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107377372678600