Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_022750.1
Length=33628
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 637 1e-178
>seq52999
Length=1923
Score = 637 bits (706), Expect = 1e-178
Identities = 1256/1829 (69%), Gaps = 63/1829 (3%)
Strand=Plus/Minus
Query 997 ATCGGGGAGCTGTGATGCACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 1056
|| || ||||||||||||||||| || || | | ||||| ||| || ||| ||
Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849
Query 1057 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGA 1116
||||| |||||||| | | || | | |||||| ||||| ||||| | || |||||
Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789
Query 1117 TCGAGTACCGGCACCGGCTCACCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 1176
|| || ||||| | ||| || |||||||| || |||||| || || | | ||||
Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732
Query 1177 ATTGTTTT-----TGCCGCT--GGTCGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAG 1226
|| ||| | ||| || || ||| | | | | || | | |||||||||||
Sbjct 1731 AT-GTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAG 1673
Query 1227 TAAAACTCCAGAATGGTGGATGTCAGCG-GAGTGCTGATACCGGCGGTG-AGTGGCTCAT 1284
|||| ||||| |||| | | ||| | |||| | | | | || || ||||| |
Sbjct 1672 TAAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGT 1621
Query 1285 TTAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGC 1344
|| ||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||
Sbjct 1620 TTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGC 1561
Query 1345 TGGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACG 1404
||| |||||||| | | | |||||| || ||| |||||||||| |||||| |
Sbjct 1560 TGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATG 1501
Query 1405 AGCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGGATAACGTCT 1463
| ||| | ||||||| | |||| ||||| | ||||| | || | | ||| |||
Sbjct 1500 A-CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCG 1442
Query 1464 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGCGCG-GC 1522
| ||||| ||||||| ||| |||||| | ||| | ||| | || | | ||
Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGC 1382
Query 1523 GGGATAGAACGAGCGCACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAATCCC 1582
|||| |||| | || || | | || || | |||| |||||||| || || ||
Sbjct 1381 GGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCC 1323
Query 1583 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGGCAAA 1642
||| || |||||| || | | || || | | ||||| || ||||| | ||
Sbjct 1322 GATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAA 1263
Query 1643 GTCCATGCCTTTCCACTGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACCACCGG 1702
|||||| || |||||||||||| |||||||| | ||| ||||| || | ||| | ||
Sbjct 1262 GTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGG 1203
Query 1703 CGGTGCCAGCACCACGCATCCGGCGCTGTCGCCA--CGGTGTGAC-------GGGTCGTA 1753
|||||||| ||||||||||||||||||||||| | | || | ||||||||
Sbjct 1202 CGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTA 1143
Query 1754 ACCAATCCATACCGGGCGGGAGCCGAACGGATTTGCG----GCAAACGGCGCATAGTCTT 1809
|| ||||| || |||||||||| ||| || | || | || ||||
Sbjct 1142 GCCGATCCACACTTCTTTCCAGCCGAACGG----GCGCAGCGCCAGCGCCTCAAAGTCGG 1087
Query 1810 CCCATTCTTCC-AGCGTGTCGACCATACAGCGTTGCAGCTCCTCGAACGGGAACACCGAC 1868
||| ||||| ||| |||| ||||| || |||||| | | | |||| ||||||
Sbjct 1086 TCCAGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC 1028
Query 1869 GCCTTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCG 1928
||| ||||| | ||| | ||||| | |||||| | |||| || | ||||| ||
Sbjct 1027 GCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CG 969
Query 1929 CGTTTG-AGCTGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGT 1987
||| | |||||||| | ||| ||||| |||||||| || || || |||| |||
Sbjct 968 CGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGT 909
Query 1988 GACAATCTGCCGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACT 2047
||| ||||| || |||||||||| | ||||| | || |||| || | | ||| ||
Sbjct 908 GACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCT 849
Query 2048 GACGTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGA 2107
|| ||| || || || || || || |||| || ||| ||||||| | ||| ||
Sbjct 848 GAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGA 792
Query 2108 CCAGAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGATCGCAG 2167
||||||||| |||||| ||||| || ||||||||||||| || ||||| ||||
Sbjct 791 CCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTT--TCGC-- 736
Query 2168 GTGACTC--TGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGA 2223
| ||| |||| || ||||| || || ||||| || ||||| ||||||| |||||||
Sbjct 735 GCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGA 676
Query 2224 TCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGG 2283
|||||||| ||||| | |||||| | ||||| || |||||| |||||| || |||||
Sbjct 675 TCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGG 616
Query 2284 TGCCGAGAAAAATCAGTTTTGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGT 2343
|||| || ||| ||| ||||||||| || | | || ||||||| || ||||||
Sbjct 615 TGCCCAGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGT 559
Query 2344 CAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTT 2403
| ||||| ||| |||||||| | |||||||| | ||| || | |||||||| |
Sbjct 558 CTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCT 499
Query 2404 TACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGC 2463
||||||| || || || ||||| || | ||||| |||| || | |||||||||||
Sbjct 498 TACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGC 439
Query 2464 GGGAAAAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGTGCT 2523
||| |||| | || || || ||||||||||| || ||||| | | ||||| | || ||
Sbjct 438 GGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACT 379
Query 2524 CAAGCCCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCT 2583
| |||||| |||| || ||| || |||| | | ||||| || ||
Sbjct 378 TATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCT 319
Query 2584 CCAGCTTTTCGATGGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGACGCCCGCCTT 2643
|||||| || || ||||| ||||| | ||||||| ||| |||| ||| |
Sbjct 318 GCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCT 259
Query 2644 TGTTGCGGTTAGCGACGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAGCGGT 2703
|||||||||| | ||||||||||| ||||| || || |||||| | ||| | |
Sbjct 258 TGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGC 199
Query 2704 TTACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGC 2763
| ||| || | || || ||| || | |||||||| |||||||||||||| |
Sbjct 198 CGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTC 139
Query 2764 CGGTTTTCTGCGGTTTGATGATGAGCTGG 2792
| |||||| || ||||||||||||
Sbjct 138 CTTCCTTCTGCTCCTTCATGATGAGCTGG 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107377372678600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |