Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq280 156 3e-33
seq21746 136 3e-27
>seq280
Length=341618
Score = 156 bits (172), Expect = 3e-33
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| || ||||| || || || |||||||| ||||||||||| | | ||||||
Sbjct 106036 ACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCC 106095
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || ||||| || | || || | || ||||| || || ||||| || ||
Sbjct 106096 ATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTT 106155
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | ||| ||| ||| |||| | ||| || ||| |||| || || ||||| ||
Sbjct 106156 ATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGAT 106215
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||||||||| || |||||||||||||| |||||
Sbjct 106216 GGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 156 bits (172), Expect = 3e-33
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| || ||||| || || || |||||||| ||||||||||| | | ||||||
Sbjct 114282 ACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGGCC 114341
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || ||||| || | || || | || ||||| || || ||||| || ||
Sbjct 114342 ATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCCTT 114401
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | ||| ||| ||| |||| | ||| || ||| |||| || || ||||| ||
Sbjct 114402 ATCTTGGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGAT 114461
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||||||||| || |||||||||||||| |||||
Sbjct 114462 GGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
Score = 147 bits (162), Expect = 2e-30
Identities = 166/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||| |||||| || || || ||||| ||||| ||||| | | ||||||
Sbjct 106492 ACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCC 106551
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || | ||||||||| ||| | || || | ||||||||| || ||||||||||||||
Sbjct 106552 GTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTT 106611
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | ||| ||| | || | ||| || || |||| || || ||||| |
Sbjct 106612 GTCTTG-AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGA 106670
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || |||||||| || || || || || || ||||||||
Sbjct 106671 TGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 106710
Score = 147 bits (162), Expect = 2e-30
Identities = 166/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||| |||||| || || || ||||| ||||| ||||| | | ||||||
Sbjct 114738 ACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGACAAGGTGCGTCC 114797
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || | ||||||||| ||| | || || | ||||||||| || ||||||||||||||
Sbjct 114798 GTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGAATACCCTCTTT 114857
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | ||| ||| | || | ||| || || |||| || || ||||| |
Sbjct 114858 GTCTTG-AATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACCTCCAGAGTGA 114916
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || |||||||| || || || || || || ||||||||
Sbjct 114917 TGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATTTT 114956
Score = 141 bits (156), Expect = 7e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | || |||||| ||||| || ||||| || || ||||| ||||| || || |
Sbjct 105568 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 105627
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| |||||||| ||||| || | || || | |||||||| || ||
Sbjct 105628 CAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGG 105687
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||||||| ||||| || | || |||||| | || | ||||| || | || ||
Sbjct 105688 AATACCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAAC 105747
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || ||||| ||||||| ||| || ||||||||||||||
Sbjct 105748 CTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795
Score = 141 bits (156), Expect = 7e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | || |||||| ||||| || ||||| || || ||||| ||||| || || |
Sbjct 113814 TCCTCCGCGCAGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGA 113873
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| |||||||| ||||| || | || || | |||||||| || ||
Sbjct 113874 CAAGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGG 113933
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||||||| ||||| || | || |||||| | || | ||||| || | || ||
Sbjct 113934 AATACCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAAC 113993
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || ||||| ||||||| ||| || ||||||||||||||
Sbjct 113994 CTCCAACGTGATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041
Score = 138 bits (152), Expect = 9e-28
Identities = 163/218 (75%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| |||||||| || || || || ||||| ||||| || |||| | ||||||
Sbjct 105352 ACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGCCC 105411
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| ||||| || || |||||| | ||||| | |||||| || || |||||||| || ||
Sbjct 105412 GTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTT 105471
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | ||||| |||| | ||||| || | || || || | ||||
Sbjct 105472 GTCTTG-AATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTA 105530
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||||||||||| | ||| || || || || ||||||
Sbjct 105531 TAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATT 105568
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| |||||||| || || || || ||||| ||||| || || | | ||||||
Sbjct 105808 ACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCC 105867
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || |||||||| || | ||||| | |||||||| || |||||||| || ||
Sbjct 105868 ATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 105927
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | || ||| ||| |||| | ||||| || | || || || | || ||
Sbjct 105928 ATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGAT 105987
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||||||||| ||| || || || || |||||
Sbjct 105988 AGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 106023
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| |||||||| || || || || ||||| ||||| || || | | ||||||
Sbjct 114054 ACGCAGGACCAAATGCAGAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAGGTGCGGCC 114113
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || |||||||| || | ||||| | |||||||| || |||||||| || ||
Sbjct 114114 ATCTTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCTTCCTT 114173
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| | || ||| ||| |||| | ||||| || | || || || | || ||
Sbjct 114174 ATCTTGGATCTTGGCTTTAACATTTTCGATGGTGTCTGATGGCTCAACCTCCAAGGTGAT 114233
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||||||||| ||| || || || || |||||
Sbjct 114234 AGTTTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 114269
Score = 100 bits (110), Expect = 2e-16
Identities = 118/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| || || |||||| | ||||| | |||||| || || |||||||| || |||
Sbjct 113659 TCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTG 113718
Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||||| ||| || | ||||| |||| | ||||| || | || || || | |||||
Sbjct 113719 TCTTG-AATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTAT 113777
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||||||||||| | ||| || || || || ||||||
Sbjct 113778 AGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATT 113814
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| |||||||| || || || || ||||| ||||||||||| | | || ||
Sbjct 104896 ACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTACGGCC 104955
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || ||||| || | || || | || ||||| || || ||||| |||||
Sbjct 104956 ATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCTTT 105015
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | || || || | || | ||||| || | || || || | || ||
Sbjct 105016 GTCCTGGATCTTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAACCTCCAAGGTGAT 105075
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||||||||| | || || || || || |||||
Sbjct 105076 GGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| ||||||||||| || || ||||| || ||||| || || || |
Sbjct 104657 CCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGGAC 104716
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || || || | ||||| || ||| | ||||| | || ||||| || |||
Sbjct 104717 AAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAGGA 104776
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| || || || || | ||| ||| ||| |||| | ||||| || | || ||
Sbjct 104777 ATACCTTCCTTATCCTGGATTTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCAACC 104836
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || ||||| || || | || || || || ||||||||
Sbjct 104837 TCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
>seq21746
Length=7614
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || ||||| |||||| || || || || || ||||||||||| || || |
Sbjct 2422 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAC 2363
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || ||| ||| || | ||| ||||| || | ||||| | ||| ||||| || ||
Sbjct 2362 AAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGT 2303
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| ||||| ||||| | ||| |||||| |||| | |||||||||| | || ||
Sbjct 2302 ATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACC 2243
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| | ||| || || ||||| || | ||||| || || |||||||||||
Sbjct 2242 TCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTT 2193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384812296570470
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