Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq52999 378 2e-100 >seq52999 Length=1923 Score = 378 bits (418), Expect = 2e-100 Identities = 948/1415 (67%), Gaps = 48/1415 (3%) Strand=Plus/Minus Query 2973 CCGCTCGGGGTGATGGTTTTCTGGATCGCCAGCAGTGACTGCGTGAGGTCGGTCCAGCCG 3032 ||||| | ||| ||| ||| |||| | || | |||||||| || |||| || | Sbjct 1537 CCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGGCTG 1478 Query 3033 GCGTCGTACTCCAGCCGTTCGTCATTGATTACGTCGTAGGCTTTCAGCACCAGCCGCGTT 3092 ||||| |||||||||| || ||| |||||| || ||||||||||| ||||| Sbjct 1477 GCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGG-GCGTT 1419 Query 3093 TT-CACCT-CGGGCGAGTAGTTGAAGACGGTCACGCCGGGGAAGAACTGGCGC--ACCAG 3148 || ||| | |||| | ||| || | |||| |||||||| ||| || Sbjct 1418 TTTCACGTTCGGGTTA-TAGACAAACTCCTTCACCTGCGGGAAGAA--GGCTTTGACATT 1362 Query 3149 CTGTGCAACGCCGGTGCCCATGCCGGTCGCATCCACGCCGATGTAGGTCACCCAATAGCG 3208 || ||||| || | |||||| | || | |||||| ||||| || ||| | Sbjct 1361 CTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACTG 1302 Query 3209 CTTGGTGATCTGCTCGATGAACGCGGCCTGGTCCTTGAACTCCATGCCCTTGAACTGATG 3268 || || | | | |||| | ||||| || ||| ||||| || |||| || Sbjct 1301 CTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTGGTG 1242 Query 3269 GCGTTCCAGCACGCGGAACTTGCCGCAGGGCACCAGCGGCGGGGCTACCACCACGATGCC 3328 || || || | |||||||||||||| ||||| ||||| || | |||||| || Sbjct 1241 ACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCATCC 1182 Query 3329 CGCGCTGTCGCCGGTCT-CG--------GCCGGGTCGTAGCCGATCCACACAGCGCGGTC 3379 |||||||||||| ||| || || |||||||||||||||||||| | Sbjct 1181 GGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTTCCA 1122 Query 3380 GCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCGAC 3439 |||| | || || | || | || || ||||| | ||| | ||||||| || || Sbjct 1121 GCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCG---GTCCAGACTTCCCAGCTGTCCAC 1065 Query 3440 CTGACAGGGCTGCAGCATCGTGAGCGGGAATACGCTGGCGCTGTCATCCACGAACTCGCA 3499 | || ||||||||| | ||| ||||||| || || |||| || |||| Sbjct 1064 CATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCA 1005 Query 3500 CATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCGCG-GCGCAGTTCCTCGATATCGA 3558 ||||||||| || | | ||||| | ||||||| |||| |||||| | ||| | || | Sbjct 1004 CATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGCGTGCGCAGCTGCTCCAGGTCAA 946 Query 3559 ACAGGTCACAGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTGGCGCCAGATCGCGT 3618 ||||||||||||| | || ||||||| |||||| ||||||||||| | ||| Sbjct 945 ACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGT 886 Query 3619 CCTCGCAACGCCGGCCACCCATCAGGCGCGCGTGGCTCACATCCAGCTGGATCTGCTGGG 3678 | ||||| | || || | ||| | ||||| | || | ||| | || Sbjct 885 CTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAAT----ATCAACCCGG 830 Query 3679 ACACC----GAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGAAGGCTTCATGC 3734 || | | || ||||||||||| || |||| |||||| |||| ||| Sbjct 829 TCAGCTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGC 770 Query 3735 GCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTCTTGTGCATCGCCATGCCG 3794 | | | ||||||| ||| |||||||| | ||||||||||||||||| |||||||||| Sbjct 769 GTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCG 710 Query 3795 CTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGG-TCCAGAAGAACTCGTCAAAGTAGAA 3853 || || || | ||| | | ||||| || ||||||| | || || | ||| | Sbjct 709 GACGCCACTTTCTGCAGTTCCT-GAAACTTCGGGATCCAGAAATATTCATCCAGGTACAG 651 Query 3854 ATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAGGAAGAACAGCTCGGCGCC 3913 ||||||||| |||| ||| |||||||||||||||||||||||||| |||| || || Sbjct 650 ATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACC 591 Query 3914 ATTGGCCAGGGTGATCGGGTCGCCGGTCAGGTCACGGTCCAGCACCTCACGCACGAAGCC 3973 || || || ||||||||||| ||||||| ||||| |||| || | || | Sbjct 590 GTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCA---CCTCGCGGGCAAATTC 534 Query 3974 CCGCATATAGCCGAGGAAGATGTGCGCTTGGCTCTTGGATGCGCTCAGGAAAATCTGGTT 4033 || || ||||| |||||| || ||| || ||||| ||||| || Sbjct 533 AATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATT 474 Query 4034 GCGGCCGGTGGTCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACCGAT 4093 ||| |||||||||||||| |||||||||||||||||||| || || ||||||| || || Sbjct 473 GCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAAT 414 Query 4094 CTGGCGCGACTTCAGGATGATGCG--CGTGCGT--TCGTTGCCCGCCCGGTACCAATCGC 4149 ||||||||||||||| | | |||| || | || | || || ||| |||| | || Sbjct 413 CTGGCGCGACTTCAGCAGGTTGCGGACG-GAGTACTTATTCCCGGCCTCCCACCACTGGC 355 Query 4150 GCTGGTAGTCGAAACAGCCATCC-ACGAACGCCGTCTGCAGGCGCTCGATCTCTTCCTCG 4208 |||||||| || |||| | | || ||| || |||||| ||| |||| ||| ||| Sbjct 354 GCTGGTAGCCG-AACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCG 296 Query 4209 CTGAACTCGTTCTTGCGCGCCTTCTT-CTTGGGCGCTGCGTTGCGGTTGGCCACCGCCGG 4267 |||||| |||||| || ||| | |||| || ||||||||| |||| ||| Sbjct 295 CTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCT-TGTTGCGGTTCTCCACGTTCGG 237 Query 4268 ATTGAGGTCAGCCTCGTTGCCACCGCCCTGGTACCGTTG--AATGCGCGCCTGCCGTTCC 4325 ||| ||||| || || ||||| | | || | ||| || || || || || || Sbjct 236 ATTCAGGTCCGCTTCATTGCCGC--CATTGCTGAATTTGCCGATCCGGGCATGGCGCTCG 179 Query 4326 AACTGGCGGTGCAGCAGATCAATCTCTTTGAAGTC 4360 |||| || |||||| || || || |||||||| Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107048111904980