Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_023588.1
Length=33525
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 378 2e-100
>seq52999
Length=1923
Score = 378 bits (418), Expect = 2e-100
Identities = 948/1415 (67%), Gaps = 48/1415 (3%)
Strand=Plus/Minus
Query 2973 CCGCTCGGGGTGATGGTTTTCTGGATCGCCAGCAGTGACTGCGTGAGGTCGGTCCAGCCG 3032
||||| | ||| ||| ||| |||| | || | |||||||| || |||| || |
Sbjct 1537 CCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTGGCTG 1478
Query 3033 GCGTCGTACTCCAGCCGTTCGTCATTGATTACGTCGTAGGCTTTCAGCACCAGCCGCGTT 3092
||||| |||||||||| || ||| |||||| || ||||||||||| |||||
Sbjct 1477 GCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGG-GCGTT 1419
Query 3093 TT-CACCT-CGGGCGAGTAGTTGAAGACGGTCACGCCGGGGAAGAACTGGCGC--ACCAG 3148
|| ||| | |||| | ||| || | |||| |||||||| ||| ||
Sbjct 1418 TTTCACGTTCGGGTTA-TAGACAAACTCCTTCACCTGCGGGAAGAA--GGCTTTGACATT 1362
Query 3149 CTGTGCAACGCCGGTGCCCATGCCGGTCGCATCCACGCCGATGTAGGTCACCCAATAGCG 3208
|| ||||| || | |||||| | || | |||||| ||||| || ||| |
Sbjct 1361 CTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATACTG 1302
Query 3209 CTTGGTGATCTGCTCGATGAACGCGGCCTGGTCCTTGAACTCCATGCCCTTGAACTGATG 3268
|| || | | | |||| | ||||| || ||| ||||| || |||| ||
Sbjct 1301 CTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACTGGTG 1242
Query 3269 GCGTTCCAGCACGCGGAACTTGCCGCAGGGCACCAGCGGCGGGGCTACCACCACGATGCC 3328
|| || || | |||||||||||||| ||||| ||||| || | |||||| ||
Sbjct 1241 ACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGCATCC 1182
Query 3329 CGCGCTGTCGCCGGTCT-CG--------GCCGGGTCGTAGCCGATCCACACAGCGCGGTC 3379
|||||||||||| ||| || || |||||||||||||||||||| |
Sbjct 1181 GGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTTTCCA 1122
Query 3380 GCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCACTCGACCCAGCTATCGAC 3439
|||| | || || | || | || || ||||| | ||| | ||||||| || ||
Sbjct 1121 GCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCG---GTCCAGACTTCCCAGCTGTCCAC 1065
Query 3440 CTGACAGGGCTGCAGCATCGTGAGCGGGAATACGCTGGCGCTGTCATCCACGAACTCGCA 3499
| || ||||||||| | ||| ||||||| || || |||| || ||||
Sbjct 1064 CATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGCA 1005
Query 3500 CATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCGCG-GCGCAGTTCCTCGATATCGA 3558
||||||||| || | | ||||| | ||||||| |||| |||||| | ||| | || |
Sbjct 1004 CATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGCGTGCGCAGCTGCTCCAGGTCAA 946
Query 3559 ACAGGTCACAGCCACGGCCGGCCGCATCAAGAACGGTCACGATCTGGCGCCAGATCGCGT 3618
||||||||||||| | || ||||||| |||||| ||||||||||| | |||
Sbjct 945 ACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGT 886
Query 3619 CCTCGCAACGCCGGCCACCCATCAGGCGCGCGTGGCTCACATCCAGCTGGATCTGCTGGG 3678
| ||||| | || || | ||| | ||||| | || | ||| | ||
Sbjct 885 CTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAAT----ATCAACCCGG 830
Query 3679 ACACC----GAGCGTCCCTTGTTGAAGCGCTCGCCGGTCCAGAAGTCGAAGGCTTCATGC 3734
|| | | || ||||||||||| || |||| |||||| |||| |||
Sbjct 829 TCAGCTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGC 770
Query 3735 GCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACTTCTTGTGCATCGCCATGCCG 3794
| | | ||||||| ||| |||||||| | ||||||||||||||||| ||||||||||
Sbjct 769 GTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCG 710
Query 3795 CTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGG-TCCAGAAGAACTCGTCAAAGTAGAA 3853
|| || || | ||| | | ||||| || ||||||| | || || | ||| |
Sbjct 709 GACGCCACTTTCTGCAGTTCCT-GAAACTTCGGGATCCAGAAATATTCATCCAGGTACAG 651
Query 3854 ATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCCAGGAAGAACAGCTCGGCGCC 3913
||||||||| |||| ||| |||||||||||||||||||||||||| |||| || ||
Sbjct 650 ATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACC 591
Query 3914 ATTGGCCAGGGTGATCGGGTCGCCGGTCAGGTCACGGTCCAGCACCTCACGCACGAAGCC 3973
|| || || ||||||||||| ||||||| ||||| |||| || | || |
Sbjct 590 GTTACTGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCA---CCTCGCGGGCAAATTC 534
Query 3974 CCGCATATAGCCGAGGAAGATGTGCGCTTGGCTCTTGGATGCGCTCAGGAAAATCTGGTT 4033
|| || ||||| |||||| || ||| || ||||| ||||| ||
Sbjct 533 AATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATT 474
Query 4034 GCGGCCGGTGGTCAGCGCGTCGATCAGCGCCTCGCGGGCGAAGTAGTAGGTGGCACCGAT 4093
||| |||||||||||||| |||||||||||||||||||| || || ||||||| || ||
Sbjct 473 GCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAAT 414
Query 4094 CTGGCGCGACTTCAGGATGATGCG--CGTGCGT--TCGTTGCCCGCCCGGTACCAATCGC 4149
||||||||||||||| | | |||| || | || | || || ||| |||| | ||
Sbjct 413 CTGGCGCGACTTCAGCAGGTTGCGGACG-GAGTACTTATTCCCGGCCTCCCACCACTGGC 355
Query 4150 GCTGGTAGTCGAAACAGCCATCC-ACGAACGCCGTCTGCAGGCGCTCGATCTCTTCCTCG 4208
|||||||| || |||| | | || ||| || |||||| ||| |||| ||| |||
Sbjct 354 GCTGGTAGCCG-AACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTCG 296
Query 4209 CTGAACTCGTTCTTGCGCGCCTTCTT-CTTGGGCGCTGCGTTGCGGTTGGCCACCGCCGG 4267
|||||| |||||| || ||| | |||| || ||||||||| |||| |||
Sbjct 295 CTGAACAGGTTCTTTTCCGGGGGCTTACGCGGGCCCT-TGTTGCGGTTCTCCACGTTCGG 237
Query 4268 ATTGAGGTCAGCCTCGTTGCCACCGCCCTGGTACCGTTG--AATGCGCGCCTGCCGTTCC 4325
||| ||||| || || ||||| | | || | ||| || || || || || ||
Sbjct 236 ATTCAGGTCCGCTTCATTGCCGC--CATTGCTGAATTTGCCGATCCGGGCATGGCGCTCG 179
Query 4326 AACTGGCGGTGCAGCAGATCAATCTCTTTGAAGTC 4360
|||| || |||||| || || || ||||||||
Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTC 144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 107048111904980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |