Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq81708 197 1e-45 seq85787 116 4e-21 >seq81708 Length=1085 Score = 197 bits (218), Expect = 1e-45 Identities = 154/184 (84%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||||||| ||||||||||| ||||| |||||||||||||| |||||||||| || || Sbjct 417 GGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAAC 358 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||||||||||||||| ||| ||||||| || || ||||| ||||| || ||||||||| Sbjct 357 CATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAAC 298 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 | ||||| ||||| |||||||| || ||||| ||||||| ||||| || || || ||| Sbjct 297 GCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAA 238 Query 108602 TGGC 108605 | || Sbjct 237 TTGC 234 >seq85787 Length=1013 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 ||||||||||| |||||||| ||||| || |||||| | ||| ||||| | | Sbjct 768 GGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAA 709 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 |||||||| |||||||| |||||||||||||| || || || ||||| || ||||| ||| Sbjct 708 CATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAAC 649 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTAC 108588 || || ||| ||| |||||| || || || | ||||| || || Sbjct 648 TCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCAC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540559336385600