Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq81708 214 2e-50 seq85787 134 1e-26 >seq81708 Length=1085 Score = 214 bits (236), Expect = 2e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 62907 TGCCATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 62966 ||| |||||| || |||||||| ||||||| ||||| || |||||||| || || ||| Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292 Query 62967 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 63026 || | ||||||||| || ||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352 Query 63027 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 63086 ||||| || || |||||||||| |||||||||||||| ||||| ||||||||||| ||| Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412 Query 63087 CCACCTTCAATTTTAACTGTAGGTTGTGGCTCAATTTCAATTTCACGG 63134 ||||||||||| || |||| |||||| | |||||||||| Sbjct 413 CCACCTTCAATACGCACCTGCGGTTTCTGCTCAAGTGGAATTTCACGG 460 >seq85787 Length=1013 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 62907 TGCCATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 62966 ||| ||||||| || ||| || ||||| | || || || |||||| || ||| Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643 Query 62967 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 63026 || ||||| ||||| || ||||| || || || ||||||||||||||||||||||| ||| Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703 Query 63027 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGA 63086 ||||| | | ||||| ||| | |||||| || ||||| |||||||| |||||| Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763 Query 63087 CCACCTTCAATTTT 63100 |||||||| || || Sbjct 764 CCACCTTCGATGTT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538392086876000