Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_024139.1
Length=108483
Score E
Sequences producing significant alignments: (Bits) Value
seq85787 125 5e-24
seq81708 116 3e-21
>seq85787
Length=1013
Score = 125 bits (138), Expect = 5e-24
Identities = 140/187 (75%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 27340 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27399
|||||| || ||| || || ||||| |||| || || ||||| || || ||| || |
Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647
Query 27400 CATTAAATCGAACAGCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 27459
|| || || ||||| |||||||| || |||||||||| ||| |||||||| || ||||
Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707
Query 27460 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27519
||| | |||||||| ||| ||||| | | || ||||| || || || |||||||
Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767
Query 27520 CTTCGAT 27526
|||||||
Sbjct 768 CTTCGAT 774
>seq81708
Length=1085
Score = 116 bits (128), Expect = 3e-21
Identities = 132/175 (75%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413
|||||||||||| ||||||| || ||| || || | ||||| || ||||| || ||
Sbjct 251 GTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGCACG 310
Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 27472
|| ||||| || || || ||||||||||| ||||||||||| ||||| ||| |||||
Sbjct 311 GCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCATCT 370
Query 27473 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27526
| || | | ||||| | | || || || || ||||||||||||||||| ||
Sbjct 371 TCCAACGTT--TCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346654245182280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |