Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq180 107 3e-18 >seq180 Length=417715 Score = 107 bits (118), Expect = 3e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 182992 CAACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATG 183051 ||| |||| |||| | ||||| || ||| |||||||| |||| | || || Sbjct 110271 CAATTCGAGCAGGCCCACACACACGATGATCTTTGGAATGCGGCACAGGTTCAATTGGCA 110330 Query 183052 AGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGG 183111 | ||||| ||||||||| ||||| |||| ||||||||||| |||||||||||||||||| Sbjct 110331 AATGAAGGCAAAATGCATGGTTTTCTACGCATGTACTGGGCAAAAAAGATACTTGAATGG 110390 Query 183112 ACAAGAACTCCGGAAGATGCTTTGAGTTATAG-TATCTATATGAACAATAAGTACGAACT 183170 | || |||||| | || || || || | |||||| |||| | || ||| | Sbjct 110391 GCCGCTACGCCGGAACAAGCCTT-AGAAATTGCTATCTACTTGAATGACAAATACAGTTT 110449 Query 183171 AGACGGTACGGATCCTAACGGATACGTAGGT 183201 ||| || |||||| ||||| || |||||| Sbjct 110450 AGATGGACGGGATCCAAACGGCTATGTAGGT 110480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902432466891200