Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13731 228 2e-54 seq163 100 7e-16 seq43150 91.5 3e-13 seq5276 91.5 3e-13 >seq13731 Length=15303 Score = 228 bits (252), Expect = 2e-54 Identities = 572/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||||||||| ||||| ||| | |||||||| | |||||| | || || Sbjct 2388 TATTTTGGTTTCAAAACACTTGAGCGTTCCTATTTACTCAAGTTGAATGGCAAAATTGTT 2329 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| || |||||||| | |||||| | |||||||||||||| | |||||| | Sbjct 2328 GAACGTCCGCAGCACATGTTAATGCGTGTTTCCATTGGTATTCATGGTGAAGATATTGAT 2269 Query 110424 GCTGTTATTGAATGTTATGATGTA-TTAAGTAAAAAGAAAGCTATT-----CATGCTACT 110477 || | ||||||| |||| | | || | ||| |||||| ||||| || Sbjct 2268 GCCGCTATTGAAACTTATAACTTGCTTTCG------GAACGCTATTTCACACATGCCTCT 2215 Query 110478 CCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537 || || || ||| || | ||| | |||||| | || || || || | Sbjct 2214 CCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTCCTATTGACT 2155 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || | |||||| ||||| ||||| | | || | || |||| | ||||| Sbjct 2154 ATGGCTGGTGATTCCATTGATGGTATATTTACATCTGCCCACCAATGTGCTTTAATTTCC 2095 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || |||| || ||||| | | || ||| || || |||| || || ||| Sbjct 2094 AAGTCTGCTGGTGGCATTGGACTAAATGTCCATTGCATACGAGCAAAGGGCACAGCAATC 2035 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || | || || |||||| ||| | || |||||||| | || ||||| || | Sbjct 2034 GCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGTATTCAATAACGTT 1975 Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 ||| || || |||| |||||| ||| | |||| | ||||| || || | ||| Sbjct 1974 GCACGTTACGTAGATCAGGGTGGTGGCAAGCGGCCTGGCGCCTTTGCCATTTACTTGGAA 1915 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 || |||||| ||||||| ||||| || || || | || ||| ||| ||||| Sbjct 1914 CCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATACTGGAAAAGAAGAG 1855 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 || |||| | |||||||||||||| ||||||| |||||||||||||| ||||||| Sbjct 1854 CACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATTCATGGAACGTGTG 1795 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 ||| || || |||||| | |||||||| ||| | |||||| || ||| || Sbjct 1794 GAAGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCCTGGCTTACATGAGGTT 1735 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 | || |||| || ||| | | || ||| |||||||| ||||| | | ||| || Sbjct 1734 TGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGGAAGG-ACG---CGCTAA 1679 Query 111015 CAA----ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070 || | ||||||| ||||||||| ||| ||||||| || || || || || Sbjct 1678 TAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCCAGGTGGAGACCGG 1619 Query 111071 AACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGG 111130 || |||||||| ||||| || ||| |||| | ||| |||||| ||| | || Sbjct 1618 TACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAAAATATTGG 1559 Query 111131 AACAATTAAGTCTAGTAATTTGTGC 111155 || ||||| | || ||| | ||| Sbjct 1558 CACCATTAAATGCAGCAATCTATGC 1534 >seq163 Length=433384 Score = 100 bits (110), Expect = 7e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| |||||||||| || | |||||| | || || || | ||||||||||| Sbjct 196970 CATTTGCGGGACAATGATTTAGTGATTTTCAATCGTCAGCCCACATTACATAAAATGTCA 196911 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA-AGTGC 305427 ||||||| |||| |||||||| || || | | |||||||| | ||| || |||| Sbjct 196910 ATGATGGGTCATCGTGTCAAAGTTTTGCCTTGGTCCACATTTCGCATGAATCTATCGTGC 196851 Query 305428 TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || || |||||||| || || ||||| |||||||||||| | || ||||| || Sbjct 196850 -ACCACTCCCTATAATGCCGACTTCGATGGCGATGAAATGAATTTACACGTACCACA 196795 >seq43150 Length=2558 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||| ||| | |||| |||| | |||||| | || ||| | ||||||||||| Sbjct 268 AGGCATTTACGTGATGACGATTTGGTTATTTTCAATCGTCAGCCAACTTTGCATAAAATG 209 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--- 305422 |||||||| ||| || |||||||| | | | ||||| || | ||| || Sbjct 208 AGTATGATGGGCCATCGTGTAAAAGTATTGCCCTGGTCTACATTCCGTATGAATTTATCC 149 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || ||| | ||||| ||||| |||||||| || || |||||||| |||||||||| Sbjct 148 TGTACTT---CACCTTACAATGCTGATTTTGACGGCGACGAAATGAACTTGCATGTACCA 92 Query 305483 CAATC 305487 ||||| Sbjct 91 CAATC 87 >seq5276 Length=43659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||| ||| | |||| |||| | |||||| | || ||| | ||||||||||| Sbjct 35240 AGGCATTTACGTGATGACGATTTGGTTATTTTCAATCGTCAGCCAACTTTGCATAAAATG 35181 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--- 305422 |||||||| ||| || |||||||| | | | ||||| || | ||| || Sbjct 35180 AGTATGATGGGCCATCGTGTAAAAGTATTGCCCTGGTCTACATTCCGTATGAATTTATCC 35121 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || ||| | ||||| ||||| |||||||| || || |||||||| |||||||||| Sbjct 35120 TGTACTT---CACCTTACAATGCTGATTTTGACGGCGACGAAATGAACTTGCATGTACCA 35064 Query 305483 CAATC 305487 ||||| Sbjct 35063 CAATC 35059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185494892599870