Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 228 2e-54
seq163 100 7e-16
seq43150 91.5 3e-13
seq5276 91.5 3e-13
>seq13731
Length=15303
Score = 228 bits (252), Expect = 2e-54
Identities = 572/865 (66%), Gaps = 23/865 (3%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||||||||||||||| ||||| ||| | |||||||| | |||||| | || ||
Sbjct 2388 TATTTTGGTTTCAAAACACTTGAGCGTTCCTATTTACTCAAGTTGAATGGCAAAATTGTT 2329
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| || |||||||| | |||||| | |||||||||||||| | |||||| |
Sbjct 2328 GAACGTCCGCAGCACATGTTAATGCGTGTTTCCATTGGTATTCATGGTGAAGATATTGAT 2269
Query 110424 GCTGTTATTGAATGTTATGATGTA-TTAAGTAAAAAGAAAGCTATT-----CATGCTACT 110477
|| | ||||||| |||| | | || | ||| |||||| ||||| ||
Sbjct 2268 GCCGCTATTGAAACTTATAACTTGCTTTCG------GAACGCTATTTCACACATGCCTCT 2215
Query 110478 CCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537
|| || || ||| || | ||| | |||||| | || || || || |
Sbjct 2214 CCAACACTCTTTGCTGCTGCCACTCGCCAACCGCAATTGTCATCCTGTTTCCTATTGACT 2155
Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597
|| | |||||| ||||| ||||| | | || | || |||| | |||||
Sbjct 2154 ATGGCTGGTGATTCCATTGATGGTATATTTACATCTGCCCACCAATGTGCTTTAATTTCC 2095
Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657
|| |||| || ||||| | | || ||| || || |||| || || |||
Sbjct 2094 AAGTCTGCTGGTGGCATTGGACTAAATGTCCATTGCATACGAGCAAAGGGCACAGCAATC 2035
Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717
|| | || || |||||| ||| | || |||||||| | || ||||| || |
Sbjct 2034 GCGGGCACAAATGGCACTTCAAATGGTTTGGTACCAATGTTGCGGGTATTCAATAACGTT 1975
Query 110718 GCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774
||| || || |||| |||||| ||| | |||| | ||||| || || | |||
Sbjct 1974 GCACGTTACGTAGATCAGGGTGGTGGCAAGCGGCCTGGCGCCTTTGCCATTTACTTGGAA 1915
Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834
|| |||||| ||||||| ||||| || || || | || ||| ||| |||||
Sbjct 1914 CCATGGCATGCAGATATTTTTGAGTTTTTGGATTTGAAGAAGAATACTGGAAAAGAAGAG 1855
Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894
|| |||| | |||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 1854 CACCGAGCCAGAGATTTATTTTATGCTTTGTGGATACCAGATTTATTCATGGAACGTGTG 1795
Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954
||| || || |||||| | |||||||| ||| | |||||| || ||| ||
Sbjct 1794 GAAGCTAACGGAGAGTGGTCATTGATGTGTCCACATAAATGTCCTGGCTTACATGAGGTT 1735
Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014
| || |||| || ||| | | || ||| |||||||| ||||| | | ||| ||
Sbjct 1734 TGGGGCGAAGAATTCGAAAAATTATATACAAAGTATGAAAAGGAAGG-ACG---CGCTAA 1679
Query 111015 CAA----ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGG 111070
|| | ||||||| ||||||||| ||| ||||||| || || || || ||
Sbjct 1678 TAAGACGGTGAAAGCTCAAAGTCTTTGGTTCGCCATCATTGAATCCCAGGTGGAGACCGG 1619
Query 111071 AACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGG 111130
|| |||||||| ||||| || ||| |||| | ||| |||||| ||| | ||
Sbjct 1618 TACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAAAATATTGG 1559
Query 111131 AACAATTAAGTCTAGTAATTTGTGC 111155
|| ||||| | || ||| | |||
Sbjct 1558 CACCATTAAATGCAGCAATCTATGC 1534
>seq163
Length=433384
Score = 100 bits (110), Expect = 7e-16
Identities = 130/177 (73%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
|||||| |||||||||| || | |||||| | || || || | |||||||||||
Sbjct 196970 CATTTGCGGGACAATGATTTAGTGATTTTCAATCGTCAGCCCACATTACATAAAATGTCA 196911
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA-AGTGC 305427
||||||| |||| |||||||| || || | | |||||||| | ||| || ||||
Sbjct 196910 ATGATGGGTCATCGTGTCAAAGTTTTGCCTTGGTCCACATTTCGCATGAATCTATCGTGC 196851
Query 305428 TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| || |||||||| || || ||||| |||||||||||| | || ||||| ||
Sbjct 196850 -ACCACTCCCTATAATGCCGACTTCGATGGCGATGAAATGAATTTACACGTACCACA 196795
>seq43150
Length=2558
Score = 91.5 bits (100), Expect = 3e-13
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|| ||||| ||| | |||| |||| | |||||| | || ||| | |||||||||||
Sbjct 268 AGGCATTTACGTGATGACGATTTGGTTATTTTCAATCGTCAGCCAACTTTGCATAAAATG 209
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--- 305422
|||||||| ||| || |||||||| | | | ||||| || | ||| ||
Sbjct 208 AGTATGATGGGCCATCGTGTAAAAGTATTGCCCTGGTCTACATTCCGTATGAATTTATCC 149
Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482
|| ||| | ||||| ||||| |||||||| || || |||||||| ||||||||||
Sbjct 148 TGTACTT---CACCTTACAATGCTGATTTTGACGGCGACGAAATGAACTTGCATGTACCA 92
Query 305483 CAATC 305487
|||||
Sbjct 91 CAATC 87
>seq5276
Length=43659
Score = 91.5 bits (100), Expect = 3e-13
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|| ||||| ||| | |||| |||| | |||||| | || ||| | |||||||||||
Sbjct 35240 AGGCATTTACGTGATGACGATTTGGTTATTTTCAATCGTCAGCCAACTTTGCATAAAATG 35181
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTA--- 305422
|||||||| ||| || |||||||| | | | ||||| || | ||| ||
Sbjct 35180 AGTATGATGGGCCATCGTGTAAAAGTATTGCCCTGGTCTACATTCCGTATGAATTTATCC 35121
Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482
|| ||| | ||||| ||||| |||||||| || || |||||||| ||||||||||
Sbjct 35120 TGTACTT---CACCTTACAATGCTGATTTTGACGGCGACGAAATGAACTTGCATGTACCA 35064
Query 305483 CAATC 305487
|||||
Sbjct 35063 CAATC 35059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1185494892599870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |