Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq52999 594 1e-165 >seq52999 Length=1923 Score = 594 bits (658), Expect = 1e-165 Identities = 1330/1982 (67%), Gaps = 91/1982 (5%) Strand=Plus/Minus Query 8454 TTGCGCTTCACGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGG 8513 |||| ||||||| || || |||||||| ||| ||||||||||||||| ||||||||| Sbjct 1923 TTGCACTTCACGCTGATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGC 1864 Query 8514 CCATCCCACGG-CATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATC 8572 || || ||| || ||| ||||||||||| | | || | |||||| ||||| || Sbjct 1863 CCGTCA-ACGCTCACGGGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTC 1805 Query 8573 CAGCAGCTCGCGCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTCGGCCTG 8632 |||||| ||||| ||||||||||| || || ||||| || | ||| ||| || Sbjct 1804 CAGCAGTTCGCGGCGGTCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCT---CCGA 1748 Query 8633 CGCGGCCCGGTCCGTGTGGCGCTCGGTCGGCGCGTCGGCGTTGGCGGTGCGCACGTGGGC 8692 ||| |||| |||| |||| || | | |||| |||| Sbjct 1747 CGCTGCCC-----------CGCT-GGTCATGTTATCCGGCT--GCGG----CACG----- 1711 Query 8693 GGATGCCGTGCGCGCAGCGCGGCGGGTCTTG---TTGCGGCTCATGAAATCTCCAGGATG 8749 || ||| ||||| | |||| || || |||| ||| ||||||||| ||| Sbjct 1710 GGCTGC-GTGCGGGT------GCGGTTCCTGCGTTTGCTCATCAGTAAATCTCCACAATG 1658 Query 8750 --CTG-GTATTGGTGGTGG-TGACGCCTTCGAGCGGTTCGTGCGAAAGCGCATGCATGCA 8805 ||| || | ||| | || | ||| | ||||| |||| | ||||| |||||| Sbjct 1657 TTCTGCGTGT--GTGCCGCCTGTC-CCTGC-AGCGGCTCGTTTGCCAGCGCGTGCATGGT 1602 Query 8806 GGCCCACGCCAGGTCGGCGTGGCTGGTGTCCTCCGATCGGCCGGCCTGATAGGTGACGCG 8865 ||||| || | ||| |||||||| ||||| |||| || | |||||| || Sbjct 1601 CGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGTTTCATAGGTCGGACG 1542 Query 8866 NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGACATGAACGACGCGGCGAAGTCCGCCCA 8925 || ||||| || ||| |||| ||| Sbjct 1541 GTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTG 1482 Query 8926 GCCGGCGTCGAACTCCAGCCGGCCCTTGCTGATCACGTCGTGCGCCTTGAGCACCAGGGC 8985 || |||||| ||||||||||| || || ||| ||||| ||||| ||||||||||| Sbjct 1481 GCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGGGC 1422 Query 8986 GGTTTTCACTTCCACGGAATAGGTGAAG-CCTTCGGCGTCCGGGCGGAA--CTTCTGCAC 9042 | ||||||| | | | |||| || ||||| | | |||| ||| ||| || || Sbjct 1421 GTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACC-TGCGGGAAGAAGGCTT-TG-AC 1365 Query 9043 CAGGCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGACGTTGTA 9102 | | || || |||| |||||| ||||||||| | |||| |||||| || Sbjct 1364 ATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATA 1305 Query 9103 GCGCTCAGTGACGCG-CCGGATGGCGCCGGCCTGTTCCTCGTAGTCGATGCCGCGGAACT 9161 ||| || | ||| || ||||||| | ||||| || | |||| || ||||| ||| Sbjct 1304 CTGCTGCGTCA-GCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACT 1246 Query 9162 GGTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGCAC--CAGG-GGCGGNNNNNNNNNNN 9218 |||| ||||| || | ||||||||||||||||||||| |||| || | Sbjct 1245 GGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGC 1186 Query 9219 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---GGGGTCGTAGCCGACCCACACCGGCC 9275 || |||||||||||||| |||||| Sbjct 1185 ATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTT 1126 Query 9276 GGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAGTCCTCCCATACTTCCCAGGTGTCCA 9335 ||||||||| ||| |||| | || | ||||| ||| ||||||||| |||||| Sbjct 1125 TCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCA 1066 Query 9336 CCATCCCGCGCATGAGCATCGAGAGCGGAAACACGGACGCGTTGTCGTCGATGAACGCGC 9395 |||| | | ||||| | ||| | || || ||||| ||||| || || ||| Sbjct 1065 CCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGC 1006 Query 9396 ACATCAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGCCGCAACTGGTCGATGTCGA 9455 ||||||||||||| | |||| |||||| | |||| ||| || | ||| | Sbjct 1005 ACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCTGCTCCAGGTCAA 946 Query 9456 ACAGGTTGCAGCCGCCGCGCAGCGCGTCCTCTACCGTCACGATCTGGCGCCACTGACCGT 9515 |||||| ||||||||||||| ||| || || || || ||||||||||| |||| |||| Sbjct 945 ACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGT 886 Query 9516 CAGCGCAGCGCATGCCGTTGCGCAGCGCGGTGTGGCTCACGTCGATCTTGACCTGTTTGT 9575 | ||||| | ||| | ||| | ||||| | ||| || | ||| | | Sbjct 885 CTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAG 826 Query 9576 CCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGGTAGGCCTCATGCGACA 9635 | |||||| ||| ||||||| | | |||||||||||||| ||||| |||| | Sbjct 825 CTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGA 766 Query 9636 AGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCAGTGCTTGTGGATCGCCATGCCGGACG 9695 ||||||||| ||||| ||||| |||| ||||| | |||||| | |||||||||||||| Sbjct 765 GGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACG 706 Query 9696 CGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGC 9755 | || || |||||||||| || ||| | |||||| || || || | |||||| |||| Sbjct 705 CCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGC 646 Query 9756 CGTGGTAGCTCTGCGCGGTGCGGGCGTTGGTCCCGAGGAAGTACAGCGTCGCCCCGTTGG 9815 |||| |||||||||||||||||||||||||| || ||||| ||||| ||| ||||| Sbjct 645 CGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTAC 586 Query 9816 GCAACACCATCGGGTCGCCCTTCAGCTCGACG-CCGGCT-GCGTCCTTCGCGAATTGGAT 9873 | | |||||||||||||||||| || ||| || || ||| || |||| || Sbjct 585 TGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACCTCGCG-----GGCAAATTCAAT 531 Query 9874 GATGTACTGCTTGAAGACGTGCGCCTGTGCCTTGCTGGCCGATAGAAAAATCTGGTTGCG 9933 ||||||||||||||||||||||||||| ||||| ||||| || || || ||||| ||||| Sbjct 530 GATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCG 471 Query 9934 GCCAGTGGTCAGCGCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTG 9993 || ||||||||||| ||||| | ||||||||| || || | | || || || ||||| Sbjct 470 CCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTG 411 Query 9994 CCGGCTCTTGAGCAGGTTGCGGATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTG 10053 || ||| ||||||||||||| | | | ||| ||||| |||| |||||| Sbjct 410 GCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTG 351 Query 10054 GTAATCGAACATCGAGTCGCGGAAGGCCTCCAGGAGCTGC---GTCTGTTCCTCGGGGCT 10110 ||| ||||||||||| || |||| ||||| | |||| | ||||||| || ||| Sbjct 350 GTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTC---GCT 294 Query 10111 GATCGCGTTGCGCTC---GGGCTTGCTGCGCGGTCCCTTGTTGCGATTCGCCACCTTCGG 10167 || | ||| || ||||| | ||||| ||||||||||| ||| |||| ||||| Sbjct 293 GAACAGGTTCTTTTCCGGGGGCT---TACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGG 237 Query 10168 GTTCAGGTCGGTTTCGTTGCCGC--TGGCTTCGTACCGGCGCACGCGCGCCATGCGCTCC 10225 |||||||| | ||| ||||||| | ||| | | || | || || |||||| Sbjct 236 ATTCAGGTCCGCTTCATTGCCGCCATTGCT--GAATTTGCCGATCCGGGCATGGCGCTCG 179 Query 10226 ATTTGTCGGCCGAGCAGGTCGATTTCCTTGTAGTCCCGGCCTTCCTTCACTTCTTTGGCG 10285 || || | |||||||||||||||||| ||||| ||||||||| || || | Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATG 119 Query 10286 ACGAGCTGCGCCAT-GCGCTCTTCGATGCTGGACGCCACGCGCTCCACCG---CATCCGT 10341 | |||||| || | ||| | || || | | || | |||| || ||| || Sbjct 118 ATGAGCTG-GCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCAT-AGT 61 Query 10342 CGCATCCCACCCATCGCGGCGCTTCCAGCTGTGCACCGTTACAGGCTTGACGCCCAGCAT 10401 ||| ||||| |||||| |||||||||||| || ||| | || || | |||||||| Sbjct 60 CGC--CCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCAT 3 Query 10402 TT 10403 || Sbjct 2 TT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127753180164560