Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 594 1e-165
>seq52999
Length=1923
Score = 594 bits (658), Expect = 1e-165
Identities = 1330/1982 (67%), Gaps = 91/1982 (5%)
Strand=Plus/Minus
Query 8454 TTGCGCTTCACGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGG 8513
|||| ||||||| || || |||||||| ||| ||||||||||||||| |||||||||
Sbjct 1923 TTGCACTTCACGCTGATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGC 1864
Query 8514 CCATCCCACGG-CATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATC 8572
|| || ||| || ||| ||||||||||| | | || | |||||| ||||| ||
Sbjct 1863 CCGTCA-ACGCTCACGGGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTC 1805
Query 8573 CAGCAGCTCGCGCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAACACCTCGGCCTG 8632
|||||| ||||| ||||||||||| || || ||||| || | ||| ||| ||
Sbjct 1804 CAGCAGTTCGCGGCGGTCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCT---CCGA 1748
Query 8633 CGCGGCCCGGTCCGTGTGGCGCTCGGTCGGCGCGTCGGCGTTGGCGGTGCGCACGTGGGC 8692
||| |||| |||| |||| || | | |||| ||||
Sbjct 1747 CGCTGCCC-----------CGCT-GGTCATGTTATCCGGCT--GCGG----CACG----- 1711
Query 8693 GGATGCCGTGCGCGCAGCGCGGCGGGTCTTG---TTGCGGCTCATGAAATCTCCAGGATG 8749
|| ||| ||||| | |||| || || |||| ||| ||||||||| |||
Sbjct 1710 GGCTGC-GTGCGGGT------GCGGTTCCTGCGTTTGCTCATCAGTAAATCTCCACAATG 1658
Query 8750 --CTG-GTATTGGTGGTGG-TGACGCCTTCGAGCGGTTCGTGCGAAAGCGCATGCATGCA 8805
||| || | ||| | || | ||| | ||||| |||| | ||||| ||||||
Sbjct 1657 TTCTGCGTGT--GTGCCGCCTGTC-CCTGC-AGCGGCTCGTTTGCCAGCGCGTGCATGGT 1602
Query 8806 GGCCCACGCCAGGTCGGCGTGGCTGGTGTCCTCCGATCGGCCGGCCTGATAGGTGACGCG 8865
||||| || | ||| |||||||| ||||| |||| || | |||||| ||
Sbjct 1601 CGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCTGGTTTCATAGGTCGGACG 1542
Query 8866 NNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGACATGAACGACGCGGCGAAGTCCGCCCA 8925
|| ||||| || ||| |||| |||
Sbjct 1541 GTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGACTGCGCGATGTCGAGGTG 1482
Query 8926 GCCGGCGTCGAACTCCAGCCGGCCCTTGCTGATCACGTCGTGCGCCTTGAGCACCAGGGC 8985
|| |||||| ||||||||||| || || ||| ||||| ||||| |||||||||||
Sbjct 1481 GCTGGCGTCAAACTCCAGCCGCCCGCTGGCGATGGTGTCGTAAGCCTTCAGCACCAGGGC 1422
Query 8986 GGTTTTCACTTCCACGGAATAGGTGAAG-CCTTCGGCGTCCGGGCGGAA--CTTCTGCAC 9042
| ||||||| | | | |||| || ||||| | | |||| ||| ||| || ||
Sbjct 1421 GTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACC-TGCGGGAAGAAGGCTT-TG-AC 1365
Query 9043 CAGGCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGCGACGTTGTA 9102
| | || || |||| |||||| ||||||||| | |||| |||||| ||
Sbjct 1364 ATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATATAGGTGACGTTATA 1305
Query 9103 GCGCTCAGTGACGCG-CCGGATGGCGCCGGCCTGTTCCTCGTAGTCGATGCCGCGGAACT 9161
||| || | ||| || ||||||| | ||||| || | |||| || ||||| |||
Sbjct 1304 CTGCTGCGTCA-GCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCCATCCCGCGCCACT 1246
Query 9162 GGTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGCAC--CAGG-GGCGGNNNNNNNNNNN 9218
|||| ||||| || | ||||||||||||||||||||| |||| || |
Sbjct 1245 GGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGTGCCATGACCACGC 1186
Query 9219 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---GGGGTCGTAGCCGACCCACACCGGCC 9275
|| |||||||||||||| ||||||
Sbjct 1185 ATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCGATCCACACTTCTT 1126
Query 9276 GGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAGTCCTCCCATACTTCCCAGGTGTCCA 9335
||||||||| ||| |||| | || | ||||| ||| ||||||||| ||||||
Sbjct 1125 TCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACTTCCCAGCTGTCCA 1066
Query 9336 CCATCCCGCGCATGAGCATCGAGAGCGGAAACACGGACGCGTTGTCGTCGATGAACGCGC 9395
|||| | | ||||| | ||| | || || ||||| ||||| || || |||
Sbjct 1065 CCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCCAGATCGTCCATAAAGACGC 1006
Query 9396 ACATCAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGCCGCAACTGGTCGATGTCGA 9455
||||||||||||| | |||| |||||| | |||| ||| || | ||| |
Sbjct 1005 ACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGCGCAGCTGCTCCAGGTCAA 946
Query 9456 ACAGGTTGCAGCCGCCGCGCAGCGCGTCCTCTACCGTCACGATCTGGCGCCACTGACCGT 9515
|||||| ||||||||||||| ||| || || || || ||||||||||| |||| ||||
Sbjct 945 ACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCTGGCGAAACTGGCCGT 886
Query 9516 CAGCGCAGCGCATGCCGTTGCGCAGCGCGGTGTGGCTCACGTCGATCTTGACCTGTTTGT 9575
| ||||| | ||| | ||| | ||||| | ||| || | ||| | |
Sbjct 885 CTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCAATATCAACCCGGTCAG 826
Query 9576 CCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGGTAGGCCTCATGCGACA 9635
| |||||| ||| ||||||| | | |||||||||||||| ||||| |||| |
Sbjct 825 CTTTGGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACGGATAGGCGCTGTGCGTGA 766
Query 9636 AGCTGGACGGCGTGGAGAAGTACGTTTGCCGCCAGTGCTTGTGGATCGCCATGCCGGACG 9695
||||||||| ||||| ||||| |||| ||||| | |||||| | ||||||||||||||
Sbjct 765 GGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCTTGTGCAGCGCCATGCCGGACG 706
Query 9696 CGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGC 9755
| || || |||||||||| || ||| | |||||| || || || | |||||| ||||
Sbjct 705 CCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGC 646
Query 9756 CGTGGTAGCTCTGCGCGGTGCGGGCGTTGGTCCCGAGGAAGTACAGCGTCGCCCCGTTGG 9815
|||| |||||||||||||||||||||||||| || ||||| ||||| ||| |||||
Sbjct 645 CGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTAC 586
Query 9816 GCAACACCATCGGGTCGCCCTTCAGCTCGACG-CCGGCT-GCGTCCTTCGCGAATTGGAT 9873
| | |||||||||||||||||| || ||| || || ||| || |||| ||
Sbjct 585 TGAGCGTCATCGGGTCGCCCTTCAGGTCTACGTCCACCTCGCG-----GGCAAATTCAAT 531
Query 9874 GATGTACTGCTTGAAGACGTGCGCCTGTGCCTTGCTGGCCGATAGAAAAATCTGGTTGCG 9933
||||||||||||||||||||||||||| ||||| ||||| || || || ||||| |||||
Sbjct 530 GATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCG 471
Query 9934 GCCAGTGGTCAGCGCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTG 9993
|| ||||||||||| ||||| | ||||||||| || || | | || || || |||||
Sbjct 470 CCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTG 411
Query 9994 CCGGCTCTTGAGCAGGTTGCGGATGCGCTCGACCTGCCCAGCCTCGTACCAGACGCGCTG 10053
|| ||| ||||||||||||| | | | ||| ||||| |||| ||||||
Sbjct 410 GCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTCCCGGCCTCCCACCACTGGCGCTG 351
Query 10054 GTAATCGAACATCGAGTCGCGGAAGGCCTCCAGGAGCTGC---GTCTGTTCCTCGGGGCT 10110
||| ||||||||||| || |||| ||||| | |||| | ||||||| || |||
Sbjct 350 GTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGCTTCTCAATCTGTTCGTC---GCT 294
Query 10111 GATCGCGTTGCGCTC---GGGCTTGCTGCGCGGTCCCTTGTTGCGATTCGCCACCTTCGG 10167
|| | ||| || ||||| | ||||| ||||||||||| ||| |||| |||||
Sbjct 293 GAACAGGTTCTTTTCCGGGGGCT---TACGCGGGCCCTTGTTGCGGTTCTCCACGTTCGG 237
Query 10168 GTTCAGGTCGGTTTCGTTGCCGC--TGGCTTCGTACCGGCGCACGCGCGCCATGCGCTCC 10225
|||||||| | ||| ||||||| | ||| | | || | || || ||||||
Sbjct 236 ATTCAGGTCCGCTTCATTGCCGCCATTGCT--GAATTTGCCGATCCGGGCATGGCGCTCG 179
Query 10226 ATTTGTCGGCCGAGCAGGTCGATTTCCTTGTAGTCCCGGCCTTCCTTCACTTCTTTGGCG 10285
|| || | |||||||||||||||||| ||||| ||||||||| || || |
Sbjct 178 GACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCTTCCTTCTGCTCCTTCATG 119
Query 10286 ACGAGCTGCGCCAT-GCGCTCTTCGATGCTGGACGCCACGCGCTCCACCG---CATCCGT 10341
| |||||| || | ||| | || || | | || | |||| || ||| ||
Sbjct 118 ATGAGCTG-GCAGTAGCGTGCGGCGGTGGTCAGCTGCATCTGATCCAGCGGGCCAT-AGT 61
Query 10342 CGCATCCCACCCATCGCGGCGCTTCCAGCTGTGCACCGTTACAGGCTTGACGCCCAGCAT 10401
||| ||||| |||||| |||||||||||| || ||| | || || | ||||||||
Sbjct 60 CGC--CCCACTTATCGCGCTTCTTCCAGCTGTGAACGGTTGCGGGTTTCTCTCCCAGCAT 3
Query 10402 TT 10403
||
Sbjct 2 TT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127753180164560
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