Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq21746 114 3e-20
seq280 100 7e-16
>seq21746
Length=7614
Score = 114 bits (126), Expect = 3e-20
Identities = 162/227 (71%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| || |||||| || || || || || ||||||||||| || ||
Sbjct 2193 AAAATG---CAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAG 2249
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
||||||||| ||||| || ||| || || ||||| |||||||| || ||
Sbjct 2250 CCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCA 2309
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
|| ||| | | || |||||||| ||||| ||||||||||| | |||||| ||||
Sbjct 2310 GATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGAC 2369
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||| | || || ||||| || || ||| | || ||| | || ||
Sbjct 2370 TACAACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCG 2416
>seq280
Length=341618
Score = 100 bits (110), Expect = 7e-16
Identities = 148/204 (73%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| |||||| ||||| | || || ||||| |||||| |||| || ||| ||| ||
Sbjct 106248 CAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCCGAT 106189
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||| ||| || ||||| || ||||| || || || |||
Sbjct 106188 ACTATCGAAAATGTGAAAGCCAAA-ATCCAAGATAAGGAAGGTATCCCACCAGA---TCA 106133
Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
| || || ||||||||||| |||||| | |||||||| | || ||| ||||||| ||
Sbjct 106132 ACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAA 106073
Query 206349 CGTCCAGAAAGAGTCTACTCTTCA 206372
| | || ||||||||||| || ||
Sbjct 106072 CATACAAAAAGAGTCTACCCTGCA 106049
Score = 100 bits (110), Expect = 7e-16
Identities = 148/204 (73%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| |||||| ||||| | || || ||||| |||||| |||| || ||| ||| ||
Sbjct 114494 CAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCCGAT 114435
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||| ||| || ||||| || ||||| || || || |||
Sbjct 114434 ACTATCGAAAATGTGAAAGCCAAA-ATCCAAGATAAGGAAGGTATCCCACCAGA---TCA 114379
Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
| || || ||||||||||| |||||| | |||||||| | || ||| ||||||| ||
Sbjct 114378 ACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAA 114319
Query 206349 CGTCCAGAAAGAGTCTACTCTTCA 206372
| | || ||||||||||| || ||
Sbjct 114318 CATACAAAAAGAGTCTACCCTGCA 114295
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || || || || ||||| ||||| ||||| || || || ||||| ||||
Sbjct 105097 CAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCAGACACCATCGAGAA 105038
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300
|| ||| ||||| || || |||||||| || || || |||| || || ||
Sbjct 105037 CGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGA---TCAACAGCGTTTAAT 104981
Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360
||||||||| |||||| | |||||||| | |||||| ||||||| ||| |||| || ||
Sbjct 104980 CTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAACATCCAAAAGGA 104921
Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||| || || | || || | |||||
Sbjct 104920 GTCTACCCTCCATTTGGTCCTGCGTCTTCG 104891
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || ||||| ||||| ||||| || || || ||||| |||||
Sbjct 105324 AAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCAGACACCATCGAAAAC 105265
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||||||||| |||||||| ||| || || ||| | | || |||
Sbjct 105264 GTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTC 105205
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| || || |||||||| || | || ||| | || |||||| |||| || ||||||
Sbjct 105204 GCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACAACATCCAAAAGGAGTCT 105145
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || || | || || | |||||
Sbjct 105144 ACCCTCCATTTGGTCCTGCGTCTTCG 105119
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || |||||| |||| || ||| || || || | || |||||
Sbjct 106683 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAGAATGTAAAAGCC 106624
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| ||||| || ||| || || ||| | | ||||| ||||| ||
Sbjct 106623 AAGATTCAAGACAAAGAGGGTATTCCACCAGATCAGCAACGTTTAATCTTTGCCGGCAAA 106564
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| |||||||| ||| | || ||| ||||||||||| |||| || |||||||| |||||
Sbjct 106563 CAATTGGAAGACGGACGCACCTTGTCCGATTACAACATCCAAAAGGAGTCTACACTTCAT 106504
Query 206374 CTTGTT 206379
|| |||
Sbjct 106503 CTGGTT 106498
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || |||||| |||| || ||| || || || | || |||||
Sbjct 114929 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAGAATGTAAAAGCC 114870
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||||||||| ||||| || ||| || || ||| | | ||||| ||||| ||
Sbjct 114869 AAGATTCAAGACAAAGAGGGTATTCCACCAGATCAGCAACGTTTAATCTTTGCCGGCAAA 114810
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| |||||||| ||| | || ||| ||||||||||| |||| || |||||||| |||||
Sbjct 114809 CAATTGGAAGACGGACGCACCTTGTCCGATTACAACATCCAAAAGGAGTCTACACTTCAT 114750
Query 206374 CTTGTT 206379
|| |||
Sbjct 114749 CTGGTT 114744
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || ||||| ||||| ||||| || || || ||||| |||||
Sbjct 106008 AAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCAGACACCATCGAAAAT 105949
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| || ||||| ||| || || || | | |||||
Sbjct 105948 GTTAAAGCCAA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAGCAGCGTTTGATCTT 105890
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| || ||| | |||||||| | || ||| | || |||||| |||| || |||||
Sbjct 105889 CGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAACATCCAAAAGGAGTC 105830
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||| || | || || | |||||
Sbjct 105829 TACTCTGCATTTGGTCCTGCGTCTTCG 105803
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || ||||| ||||| ||||| || || || ||||| |||||
Sbjct 114254 AAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCAGACACCATCGAAAAT 114195
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| || ||||| ||| || || || | | |||||
Sbjct 114194 GTTAAAGCCAA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAGCAGCGTTTGATCTT 114136
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| || ||| | |||||||| | || ||| | || |||||| |||| || |||||
Sbjct 114135 CGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAACATCCAAAAGGAGTC 114076
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||| || | || || | |||||
Sbjct 114075 TACTCTGCATTTGGTCCTGCGTCTTCG 114049
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||||||| || || || || || ||||| ||||| ||||| || || || |||
Sbjct 105792 CAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCCGAC 105733
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| || ||| || || || || || ||| || || ||
Sbjct 105732 ACCATTGAGAACGTCAAAGCTAA-GATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCA 105674
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | ||||||||||| ||||| | |||||||| | || ||| |||| |||||| |
Sbjct 105673 GCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAACAT 105614
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||| || |||||||| || ||| | ||| || | || ||
Sbjct 105613 CCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCG 105575
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | || || ||||| ||||||||||| || || ||| ||
Sbjct 106476 CAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 106417
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| ||| ||||| || || |||||||| || || ||
Sbjct 106416 ACCATTGAGAATGTCAAAGCTAAA-ATTCAGGATAAGGAAGGAATCCCACCAGATCAACA 106358
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | | || ||||| || ||||||||||| |||||| | || ||| | || ||||| |
Sbjct 106357 ACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAATAT 106298
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| || ||||| | || | |||||| | || ||
Sbjct 106297 TCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACG 106259
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||||||| || || || || || ||||| ||||| ||||| || || || |||
Sbjct 114038 CAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCCGAC 113979
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| || ||| || || || || || ||| || || ||
Sbjct 113978 ACCATTGAGAACGTCAAAGCTAA-GATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCA 113920
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | ||||||||||| ||||| | |||||||| | || ||| |||| |||||| |
Sbjct 113919 GCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAACAT 113860
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||| || |||||||| || ||| | ||| || | || ||
Sbjct 113859 CCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCG 113821
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | || || ||||| ||||||||||| || || ||| ||
Sbjct 114722 CAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 114663
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| ||| ||||| || || |||||||| || || ||
Sbjct 114662 ACCATTGAGAATGTCAAAGCTAAA-ATTCAGGATAAGGAAGGAATCCCACCAGATCAACA 114604
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | | || ||||| || ||||||||||| |||||| | || ||| | || ||||| |
Sbjct 114603 ACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAATAT 114544
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| || ||||| | || | |||||| | || ||
Sbjct 114543 TCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACG 114505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1180508436013070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |