Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21746 114 3e-20 seq280 100 7e-16 >seq21746 Length=7614 Score = 114 bits (126), Expect = 3e-20 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || |||||| || || || || || ||||||||||| || || Sbjct 2193 AAAATG---CAGATTTTCGTCAAAACACTTACGGGCAAGACCATCACTTTGGAGGTCGAG 2249 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||||||| ||||| || ||| || || ||||| |||||||| || || Sbjct 2250 CCTTCTGACACTATCGAAAATGTCAAGGCTAAAATCCAAGATAAAGAAGGTATACCACCA 2309 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | || |||||||| ||||| ||||||||||| | |||||| |||| Sbjct 2310 GATCAACAACGTTTGATTTTCGCCGGCAAGCAATTGGAAGATGGTCGTACTTTGTCCGAC 2369 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| | || || ||||| || || ||| | || ||| | || || Sbjct 2370 TACAACATTCAAAAGGAGTCAACCCTCCACTTGGTGTTGCGTCTGCG 2416 >seq280 Length=341618 Score = 100 bits (110), Expect = 7e-16 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| |||||| |||| || ||| ||| || Sbjct 106248 CAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCCGAT 106189 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| || ||||| || ||||| || || || ||| Sbjct 106188 ACTATCGAAAATGTGAAAGCCAAA-ATCCAAGATAAGGAAGGTATCCCACCAGA---TCA 106133 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||||||||| |||||| | |||||||| | || ||| ||||||| || Sbjct 106132 ACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAA 106073 Query 206349 CGTCCAGAAAGAGTCTACTCTTCA 206372 | | || ||||||||||| || || Sbjct 106072 CATACAAAAAGAGTCTACCCTGCA 106049 Score = 100 bits (110), Expect = 7e-16 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || ||||| |||||| |||| || ||| ||| || Sbjct 114494 CAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCCGAT 114435 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| || ||||| || ||||| || || || ||| Sbjct 114434 ACTATCGAAAATGTGAAAGCCAAA-ATCCAAGATAAGGAAGGTATCCCACCAGA---TCA 114379 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||||||||| |||||| | |||||||| | || ||| ||||||| || Sbjct 114378 ACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAA 114319 Query 206349 CGTCCAGAAAGAGTCTACTCTTCA 206372 | | || ||||||||||| || || Sbjct 114318 CATACAAAAAGAGTCTACCCTGCA 114295 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || ||||| ||||| ||||| || || || ||||| |||| Sbjct 105097 CAAGACTCTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCGTCAGACACCATCGAGAA 105038 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||| ||||| || || |||||||| || || || |||| || || || Sbjct 105037 CGTTAAGGCCAAGATCCAGGACAAAGAAGGTATCCCACCAGA---TCAACAGCGTTTAAT 104981 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||||||| |||||| | |||||||| | |||||| ||||||| ||| |||| || || Sbjct 104980 CTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTTTGTCCGATTATAACATCCAAAAGGA 104921 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || || | || || | ||||| Sbjct 104920 GTCTACCCTCCATTTGGTCCTGCGTCTTCG 104891 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 105324 AAGACCCTAACTGGTAAAACCATCACCTTGGAGGTTGAGCCGTCAGACACCATCGAAAAC 105265 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| || || ||| | | || ||| Sbjct 105264 GTCAAGGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTC 105205 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||||||| || | || ||| | || |||||| |||| || |||||| Sbjct 105204 GCCGGTAAACAATTGGAAGACGGCCGCACCTTGTCGGACTACAACATCCAAAAGGAGTCT 105145 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || || | ||||| Sbjct 105144 ACCCTCCATTTGGTCCTGCGTCTTCG 105119 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| |||| || ||| || || || | || ||||| Sbjct 106683 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAGAATGTAAAAGCC 106624 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| || ||| || || ||| | | ||||| ||||| || Sbjct 106623 AAGATTCAAGACAAAGAGGGTATTCCACCAGATCAGCAACGTTTAATCTTTGCCGGCAAA 106564 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| ||| | || ||| ||||||||||| |||| || |||||||| ||||| Sbjct 106563 CAATTGGAAGACGGACGCACCTTGTCCGATTACAACATCCAAAAGGAGTCTACACTTCAT 106504 Query 206374 CTTGTT 206379 || ||| Sbjct 106503 CTGGTT 106498 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| |||| || ||| || || || | || ||||| Sbjct 114929 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAGAATGTAAAAGCC 114870 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| || ||| || || ||| | | ||||| ||||| || Sbjct 114869 AAGATTCAAGACAAAGAGGGTATTCCACCAGATCAGCAACGTTTAATCTTTGCCGGCAAA 114810 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| ||| | || ||| ||||||||||| |||| || |||||||| ||||| Sbjct 114809 CAATTGGAAGACGGACGCACCTTGTCCGATTACAACATCCAAAAGGAGTCTACACTTCAT 114750 Query 206374 CTTGTT 206379 || ||| Sbjct 114749 CTGGTT 114744 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 106008 AAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCAGACACCATCGAAAAT 105949 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| ||| || || || | | ||||| Sbjct 105948 GTTAAAGCCAA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAGCAGCGTTTGATCTT 105890 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||| | |||||||| | || ||| | || |||||| |||| || ||||| Sbjct 105889 CGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAACATCCAAAAGGAGTC 105830 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || | || || | ||||| Sbjct 105829 TACTCTGCATTTGGTCCTGCGTCTTCG 105803 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 114254 AAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCAGACACCATCGAAAAT 114195 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| ||| || || || | | ||||| Sbjct 114194 GTTAAAGCCAA-GATCCAAGATAAGGAAGGTATTCCCCCAGATCAGCAGCGTTTGATCTT 114136 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||| | |||||||| | || ||| | || |||||| |||| || ||||| Sbjct 114135 CGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACAACATCCAAAAGGAGTC 114076 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || | || || | ||||| Sbjct 114075 TACTCTGCATTTGGTCCTGCGTCTTCG 114049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || || || || ||||| ||||| ||||| || || || ||| Sbjct 105792 CAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCCGAC 105733 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||| || || || || || ||| || || || Sbjct 105732 ACCATTGAGAACGTCAAAGCTAA-GATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCA 105674 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| ||||| | |||||||| | || ||| |||| |||||| | Sbjct 105673 GCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAACAT 105614 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || |||||||| || ||| | ||| || | || || Sbjct 105613 CCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCG 105575 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || ||||| ||||||||||| || || ||| || Sbjct 106476 CAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 106417 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| ||||| || || |||||||| || || || Sbjct 106416 ACCATTGAGAATGTCAAAGCTAAA-ATTCAGGATAAGGAAGGAATCCCACCAGATCAACA 106358 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || ||||||||||| |||||| | || ||| | || ||||| | Sbjct 106357 ACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAATAT 106298 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| | || | |||||| | || || Sbjct 106297 TCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACG 106259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || || || || ||||| ||||| ||||| || || || ||| Sbjct 114038 CAGATATTTGTGAAGACCCTAACTGGTAAAACCATCACGTTGGAGGTTGAGCCATCCGAC 113979 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||| || || || || || ||| || || || Sbjct 113978 ACCATTGAGAACGTCAAAGCTAA-GATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCA 113920 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||||||||| ||||| | |||||||| | || ||| |||| |||||| | Sbjct 113919 GCGTTTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACCTTGTCCGACTACAACAT 113860 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || |||||||| || ||| | ||| || | || || Sbjct 113859 CCAAAAGGAGTCTACGCTCCACTTGGTTCTGCGTCTGCG 113821 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || ||||| ||||||||||| || || ||| || Sbjct 114722 CAGATTTTCGTCAAAACTTTGACGGGTAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 114663 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| ||||| || || |||||||| || || || Sbjct 114662 ACCATTGAGAATGTCAAAGCTAAA-ATTCAGGATAAGGAAGGAATCCCACCAGATCAACA 114604 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || ||||||||||| |||||| | || ||| | || ||||| | Sbjct 114603 ACGTTTAATTTTCGCTGGCAAGCAGTTGGAGGATGGACGCACATTGTCTGACTACAATAT 114544 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| | || | |||||| | || || Sbjct 114543 TCAGAAGGAATCTACATTGCATTTAGTTTTGCGCCTACG 114505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180508436013070