Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025425.1 Length=163424 Score E Sequences producing significant alignments: (Bits) Value seq81708 122 9e-23 seq85787 111 2e-19 >seq81708 Length=1085 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53979 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 54038 ||||| || ||||||||| ||||| | ||||| ||||||||||| ||||| ||||| Sbjct 236 AATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGC 295 Query 54039 CTATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 54098 || |||||||| || || || ||||||||||| || | ||| || || || || ||| Sbjct 296 GCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGA 355 Query 54099 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCA 54158 || | || || || |||| |||| || || |||||| || |||| ||||| ||| Sbjct 356 TGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCA 415 Query 54159 CCTTC 54163 ||||| Sbjct 416 CCTTC 420 >seq85787 Length=1013 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53980 ATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGAC 54039 |||| | || | ||| || ||||| | || || || |||||| ||| ||| || Sbjct 588 ATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCG 647 Query 54040 TATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGAT 54099 |||||||| || || || ||||||||||| || || |||||||| || ||||| |||| Sbjct 648 AGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGAT 707 Query 54100 GTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCAC 54159 |||| | || |||| || ||| || || || |||||| || |||| ||| || |||| Sbjct 708 GTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCAC 767 Query 54160 CTTCGA 54165 |||||| Sbjct 768 CTTCGA 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522262380348800