Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_025830.1 Length=120938 Score E Sequences producing significant alignments: (Bits) Value seq81708 181 8e-41 seq85787 114 1e-20 >seq81708 Length=1085 Score = 181 bits (200), Expect = 8e-41 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 ||||||| || |||||||| ||||| |||||||| ||||| |||||||||| || || | Sbjct 416 GTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAACC 357 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACT 109226 |||||||||||||||| ||| ||||||| || || ||||| ||||| || ||||||||| Sbjct 356 ATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACG 297 Query 109227 CTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAAT 109286 | ||||| || || |||||||| || ||||| ||||||| ||||| || || || |||| Sbjct 296 CGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAAT 237 Query 109287 GGC 109289 || Sbjct 236 TGC 234 >seq85787 Length=1013 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 109107 GTGGTCAACATCTGAACGTTAACGTTCTGCGTCGGGAAACTCTGGAAGATGCAGTTAAGC 109166 ||||||||||||||||||| ||||| || ||| || | ||| ||||| | | | Sbjct 767 GTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAAC 708 Query 109167 ATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACT 109226 ||||||| ||||||||||||||||||||||| || || || ||||| || ||||| |||| Sbjct 707 ATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAACT 648 Query 109227 CTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTTAC 109272 | || ||| || |||||| || || || | ||||| || || Sbjct 647 CGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCAC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386468145663130