Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq18 100 9e-18
seq15991 98.7 3e-17
seq5741 98.7 3e-17
seq3262 98.7 3e-17
seq142 98.7 3e-17
>seq18
Length=972713
Score = 100 bits (110), Expect = 9e-18
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 774136 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAAT 774195
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 774196 CCCGGGTTTCGGC 774208
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 770583 GCCGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 770524
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 770523 CCGGGTTTCGGC 770512
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 773878 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 773937
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 773938 CCGGGTTTCGGC 773949
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 776583 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 776524
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 776523 CCGGGTTTCGGC 776512
>seq15991
Length=12340
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 10174 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 10233
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 10234 CCGGGTTTCGGC 10245
>seq5741
Length=40264
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 30418 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 30477
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 30478 CCGGGTTTCGGC 30489
>seq3262
Length=66133
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 63733 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 63674
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 63673 CCGGGTTTCGGC 63662
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 63926 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 63867
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 63866 CCGGGTTTCGGC 63855
>seq142
Length=464359
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 339972 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 339913
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 339912 CCGGGTTTCGGC 339901
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 342791 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 342850
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 342851 CCGGGTTTCGGC 342862
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 343115 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 343056
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 343055 CCGGGTTTCGGC 343044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15834575322150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |