Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq280 105 6e-18 >seq280 Length=341618 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | ||||| | || || ||| | | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| ||||| ||||| || ||||| || || ||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | | || | || |||||| || |||||||||| | | |||| |||||| | Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTC--CGATTATA 106074 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || |||||||| || ||| | |||||||| Sbjct 106073 ACATACAAAAAGAGTCTACCCTGCATTTAGT 106043 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | ||||| | || || ||| | | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || ||| ||||| ||||| || ||||| || || ||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | | || | || |||||| || |||||||||| | | |||| |||||| | Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTC--CGATTATA 114320 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | || |||||||| || ||| | |||||||| Sbjct 114319 ACATACAAAAAGAGTCTACCCTGCATTTAGT 114289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || || || || || || | ||||| | || || ||| | Sbjct 106710 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 106651 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||||||| ||| | |||||| || ||| || ||||||||||| || || ||| Sbjct 106650 TCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGAT 106591 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 |||||| | | || | | |||||||||| | ||||| | | | |||| ||||| Sbjct 106590 CAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTC--CGATT 106533 Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378 |||| || ||||| || || || ||||| Sbjct 106532 ACAACATCCAAAAGGAGTCTACACTTCAT 106504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || || || || || || | ||||| | || || ||| | Sbjct 114956 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 114897 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||||||| ||| | |||||| || ||| || ||||||||||| || || ||| Sbjct 114896 TCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGAT 114837 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 |||||| | | || | | |||||||||| | ||||| | | | |||| ||||| Sbjct 114836 CAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTC--CGATT 114779 Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378 |||| || ||||| || || || ||||| Sbjct 114778 ACAACATCCAAAAGGAGTCTACACTTCAT 114750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444612195854400