Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq280 105 6e-18
>seq280
Length=341618
Score = 105 bits (116), Expect = 6e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||||| || || ||| | ||||| | || || ||| | |
Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||||||||| | || ||| ||||| ||||| || ||||| || || |||||
Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| | | || | || |||||| || |||||||||| | | |||| |||||| |
Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTC--CGATTATA 106074
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383
| || |||||||| || ||| | ||||||||
Sbjct 106073 ACATACAAAAAGAGTCTACCCTGCATTTAGT 106043
Score = 105 bits (116), Expect = 6e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||||| || || ||| | ||||| | || || ||| | |
Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||||||||| | || ||| ||||| ||||| || ||||| || || |||||
Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352
|| | | || | || |||||| || |||||||||| | | |||| |||||| |
Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTC--CGATTATA 114320
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383
| || |||||||| || ||| | ||||||||
Sbjct 114319 ACATACAAAAAGAGTCTACCCTGCATTTAGT 114289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231
|| |||||| | || || || || || || || || | ||||| | || || ||| |
Sbjct 106710 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 106651
Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291
||||||||| ||| | |||||| || ||| || ||||||||||| || || |||
Sbjct 106650 TCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGAT 106591
Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349
|||||| | | || | | |||||||||| | ||||| | | | |||| |||||
Sbjct 106590 CAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTC--CGATT 106533
Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378
|||| || ||||| || || || |||||
Sbjct 106532 ACAACATCCAAAAGGAGTCTACACTTCAT 106504
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231
|| |||||| | || || || || || || || || | ||||| | || || ||| |
Sbjct 114956 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 114897
Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291
||||||||| ||| | |||||| || ||| || ||||||||||| || || |||
Sbjct 114896 TCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGAT 114837
Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349
|||||| | | || | | |||||||||| | ||||| | | | |||| |||||
Sbjct 114836 CAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTC--CGATT 114779
Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378
|||| || ||||| || || || |||||
Sbjct 114778 ACAACATCCAAAAGGAGTCTACACTTCAT 114750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444612195854400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |