Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq49536 138 1e-27 seq81517 87.8 2e-12 >seq49536 Length=2110 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| ||| ||||||| || ||||| ||| || || || | |||||||||||| || Sbjct 1866 TTCAGCGGCCCCACGTGATTCTTGTAGATGTGAGCATCGCCAATGGTGTGCACAAACTCG 1925 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 |||| ||| |||||| |||||||| | ||||| ||| ||||||||||||||||| ||| Sbjct 1926 CCCGCCTTCAGGCCGCAGACGTGGGCGATCATGTGGGTCAGCAGCGAGTAGCTGGCAATG 1985 Query 147037 TTGAAGGGGACCCCCAGGCCC 147057 |||||||| || ||||||||| Sbjct 1986 TTGAAGGGCACACCCAGGCCC 2006 >seq81517 Length=1088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 146842 AAATCGTCTATGTCCTCCAC---CCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGG 146898 ||||| ||||||| || ||| ||| | | || || || ||||| || || ||||| Sbjct 397 AAATCTTCTATGTTCTTCACTTCCCGTTTTATAA-CT--AGTTTGGGAAATGGACGGGGT 453 Query 146899 TTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCC 146958 || | || | ||| ||| | ||| || | || ||| ||||| || || || || Sbjct 454 TTACGTGCTATCTGTTCTTTTAAGGGTTCAATATGATTGTTATAGACATGGGCATCACCA 513 Query 146959 AGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGC 147018 || |||||||| || || || || ||| ||||||||||| || | ||| || || | | Sbjct 514 AGAGTGTGCACGAATTCTCCGGGACGAAGTCCGGTCACGTGTGCAATCATATATGTTAAC 573 Query 147019 AGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTC-CCCCGACCTCTGGTA 147077 | | || ||| || ||||| || || |||| |||||||| | | || | || || Sbjct 574 AAAGCATAAGAGGCGATATTGAATGGCACGCCCAATCCCATGTCAGCGCTACGT-TGATA 632 Query 147078 CAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTG 147116 || ||| || || ||||| || | || ||| |||| || Sbjct 633 CAACTGACAAGACAGCTCACCATTTGCAACGAAAAATTG 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582855863688000