Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq280 102 7e-17 seq322 91.5 1e-13 seq4530 86.0 5e-12 >seq280 Length=341618 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 || |||||||||||| || || || || ||||||||||||||||| || |||| || Sbjct 106714 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 106655 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 ||| |||| || ||| | || ||| || ||| |||||||| || | || Sbjct 106654 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 106595 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 ||||| ||| | | || | ||| ||||||||||| ||||| || || ||| Sbjct 106594 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 106535 Query 106433 TTACAACATACAAAAAGAATCTACACTACAT 106463 ||||||||| ||||| || |||||||| ||| Sbjct 106534 TTACAACATCCAAAAGGAGTCTACACTTCAT 106504 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 || |||||||||||| || || || || ||||||||||||||||| || |||| || Sbjct 114960 TTCAAAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGA 114901 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 ||| |||| || ||| | || ||| || ||| |||||||| || | || Sbjct 114900 ACCATCCGATACTATTGAGAATGTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACC 114841 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 ||||| ||| | | || | ||| ||||||||||| ||||| || || ||| Sbjct 114840 AGATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGA 114781 Query 106433 TTACAACATACAAAAAGAATCTACACTACAT 106463 ||||||||| ||||| || |||||||| ||| Sbjct 114780 TTACAACATCCAAAAGGAGTCTACACTTCAT 114750 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||||||||||||||| ||||| || |||| ||||| | Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | |||||| ||||| || || ||||| | || |||||| Sbjct 106191 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 106132 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | || | || ||||| || | |||||| || || |||||| ||| Sbjct 106131 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 106072 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 ||||||||||| ||||| || |||||||| Sbjct 106071 ATACAAAAAGAGTCTACCCTGCATTTAGT 106043 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||||||||||||||| ||||| || |||| ||||| | Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | |||||| ||||| || || ||||| | || |||||| Sbjct 114437 GATACTATCGAAAATGTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATCAA 114378 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | || | || ||||| || | |||||| || || |||||| ||| Sbjct 114377 CAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATAAC 114318 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 ||||||||||| ||||| || |||||||| Sbjct 114317 ATACAAAAAGAGTCTACCCTGCATTTAGT 114289 >seq322 Length=316913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || | || |||||||| ||||| | || || || Sbjct 56428 ATGCAAATTTTCGTTAAGACCCTAACGGGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 56369 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| || || || |||||| ||||| ||||| | || |||||| Sbjct 56368 GATACAATTGAGCATGTTAAGGCGAAAATTCAAGACAAGGAAGGGATCCCTCCAGATCAA 56309 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| || || || |||||||||||| ||| | | ||||||||| Sbjct 56308 CAGCGCCTAATTTTCGCAGGAAAGCAATTAGAAGATGGGCGAACCTTAGCCGATTACAAT 56249 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||| |||||||| ||||||||||| Sbjct 56248 ATTCAAAAGGAATCTACTTTACATTTAGTA 56219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || | || ||||||| ||||| | || || || Sbjct 38533 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 38592 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| || ||||| ||||||| ||||| | ||| | ||| |||||| Sbjct 38593 GATACAATTGAGCATGTGAAGGCAAAAATTCAAGACAAGGGAGGGATCCCCCCAGATCAA 38652 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| || || ||||||| |||||| ||| | | || |||||| Sbjct 38653 CAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAAT 38712 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||| |||||||| ||||||||||| Sbjct 38713 ATTCAAAAGGAATCTACTTTACATTTAGTA 38742 >seq4530 Length=49833 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || | || ||||||| ||||| | || || || Sbjct 18307 ATGCAAATTTTCGTTAAGACCCTAACGCGCAAGACTATTACTCTTGAGGTTGAGCCTTCG 18366 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| || ||||| ||||||| ||||| | ||| | ||| |||||| Sbjct 18367 GATACAATTGAGCATGTGAAGGCAAAAATTCAAGACAAGGGAGGGATCCCCCCAGATCAA 18426 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| || || ||||||| |||||| ||| | | || |||||| Sbjct 18427 CAGCGCCTAATTTTCGCAGGAAAACAATAGGAAGATGGGCGAACCTTAGCCGGTTACAAT 18486 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||| |||||||| ||||||||||| Sbjct 18487 ATTCAAAAGGAATCTACTTTACATTTAGTA 18516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401904623015360