Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq280 134 1e-26 seq76387 131 2e-25 seq2574 118 1e-21 seq28390 98.7 9e-16 seq21746 95.1 1e-14 >seq280 Length=341618 Score = 134 bits (148), Expect = 1e-26 Identities = 177/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| | ||| ||||||||| |||||||| || | | Sbjct 105341 CCACCACGGAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 105400 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| |||| || ||||||||||| ||||| ||||| || |||||||| | |||| Sbjct 105401 AAGGTGCGCCCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 105460 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||| ||| | || | | |||||| | || ||| Sbjct 105461 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACC 105520 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT-CTGTGCGCACA 35748 |||| || || ||||| || |||| || ||||| || || |||||| || ||||| | Sbjct 105521 TCCAAGGTTATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTCCTCCGCGCAGA 105580 Query 35749 CACA 35752 | || Sbjct 105581 CGCA 105584 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | |||| ||||||||| |||||||| |||| |||||| || | || || Sbjct 105587 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 105646 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || || || |||||||| || | ||||| | |||||||||| | Sbjct 105647 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 105706 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| |||| ||| || | ||||| | || ||||||| |||||| ||||| Sbjct 105707 ATCTTA-GCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTT 105765 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || | || ||||||||||||||||| Sbjct 105766 ACCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | |||| ||||||||| |||||||| |||| |||||| || | || || Sbjct 113833 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 113892 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || || || |||||||| || | ||||| | |||||||||| | Sbjct 113893 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 113952 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| |||| ||| || | ||||| | || ||||||| |||||| ||||| Sbjct 113953 ATCTTA-GCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTT 114011 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || | || ||||||||||||||||| Sbjct 114012 ACCAGTTAGGGTCTTCACAAATATCTGCAT 114041 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | |||| ||| | ||| ||||||||| ||||||||||||| | Sbjct 106481 CCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGAC 106540 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| || || || ||||| || || || ||||| || | ||| Sbjct 106541 AAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGA 106600 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| || | | | | | || ||| | ||| ||| Sbjct 106601 ATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACC 106660 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||||| || || || |||||||| ||||| || || |||||| Sbjct 106661 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATT 106708 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | |||| ||| | ||| ||||||||| ||||||||||||| | Sbjct 114727 CCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGAC 114786 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| || || || ||||| || || || ||||| || | ||| Sbjct 114787 AAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGA 114846 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||| ||||| ||||| || | | | | | || ||| | ||| ||| Sbjct 114847 ATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACC 114906 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||| ||||| || || || |||||||| ||||| || || |||||| Sbjct 114907 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATT 114954 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | ||| || ||||| || ||| ||||| ||||| ||||| || | | Sbjct 106253 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 106312 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || || || || || || || || || | || Sbjct 106313 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 106372 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| |||| | | | | | || ||| | || || Sbjct 106373 ATTCCTTCCTTATCC-TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 106431 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| |||||||||||||||||||| || || |||||||| Sbjct 106432 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | ||| || ||||| || ||| ||||| ||||| ||||| || | | Sbjct 114499 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 114558 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||| || || || || || || || || || | || Sbjct 114559 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 114618 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| |||| | | | | | || ||| | || || Sbjct 114619 ATTCCTTCCTTATCC-TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 114677 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| |||||||||||||||||||| || || |||||||| Sbjct 114678 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || ||||||||||| ||||| ||||| || |||||||| | ||||| | |||| Sbjct 113657 CGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCT 113716 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 |||| ||||| ||| | || | | |||||| | || ||||||| || | Sbjct 113717 TGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTA 113776 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT-CTGTGCGCACACACA 35752 | ||||| || |||| || ||||| || || |||||| || ||||| || || Sbjct 113777 TAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTCCTCCGCGCAGACGCA 113830 >seq76387 Length=1185 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || | | ||| ||| |||| || |||||||| ||||| || Sbjct 224 CTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 283 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || ||||||||| |||||| ||||| | | Sbjct 284 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATT 343 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||| | |||||||| || || || | || || || Sbjct 344 CTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAAC 403 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 404 GAAGATCTGCAT 415 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| || || || Sbjct 797 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAA 856 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||||| | | Sbjct 857 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 916 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| | |||||||| | ||||| || || || || | || ||||| Sbjct 917 CTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 976 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 977 AAAGATCTGCAT 988 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| |||||||| ||| | ||| || |||| || || ||||| || || || | Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 | | ||||||||||||| |||| || ||||||||| |||||| ||||| | | Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCT 690 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||||| | |||||||| | |||||||| || || || | || || || | Sbjct 691 CAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGA 750 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 751 AGATCTGCAT 760 >seq2574 Length=80092 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||| || ||||| |||| || |||||||| || || || | Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| |||||| ||||| | | Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCT 58979 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||||| | |||||||| | ||||| || || ||||| | || ||||| | Sbjct 58980 CGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 59039 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 59040 AGATCTGCAT 59049 >seq28390 Length=4902 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | | ||| || |||| || ||||| ||||| || || Sbjct 499 CTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAA 440 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||||| ||||||| ||||| | | Sbjct 439 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 380 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || | || ||||| | ||||| || || ||||| | || ||||| Sbjct 379 CTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 320 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 319 AAAGATTTGCAT 308 >seq21746 Length=7614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || | || |||||||||||||||||| |||| | Sbjct 2422 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAC 2363 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||| || || || ||||| || || || || | || Sbjct 2362 AAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGT 2303 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || || || ||| || ||| | | || | | ||||| | || ||| Sbjct 2302 ATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACC 2243 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 |||| ||||| || || ||||| | ||||| || || ||||||||| ||| || Sbjct 2242 TCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTGTTCG 2188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450305221483600