Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq280 134 1e-26
seq76387 131 2e-25
seq2574 118 1e-21
seq28390 98.7 9e-16
seq21746 95.1 1e-14
>seq280
Length=341618
Score = 134 bits (148), Expect = 1e-26
Identities = 177/244 (73%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||||| | ||| ||||||||| |||||||| || | |
Sbjct 105341 CCACCACGGAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 105400
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| ||| |||| || ||||||||||| ||||| ||||| || |||||||| | ||||
Sbjct 105401 AAGGTGCGCCCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 105460
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||| ||||| ||| | || | | |||||| | || |||
Sbjct 105461 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACC 105520
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT-CTGTGCGCACA 35748
|||| || || ||||| || |||| || ||||| || || |||||| || ||||| |
Sbjct 105521 TCCAAGGTTATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTCCTCCGCGCAGA 105580
Query 35749 CACA 35752
| ||
Sbjct 105581 CGCA 105584
Score = 132 bits (146), Expect = 4e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | |||| ||||||||| |||||||| |||| |||||| || | || ||
Sbjct 105587 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 105646
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|| ||||| || || || || || |||||||| || | ||||| | |||||||||| |
Sbjct 105647 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 105706
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| |||| ||| || | ||||| | || ||||||| |||||| |||||
Sbjct 105707 ATCTTA-GCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTT 105765
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| || | || |||||||||||||||||
Sbjct 105766 ACCAGTTAGGGTCTTCACAAATATCTGCAT 105795
Score = 132 bits (146), Expect = 4e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | |||| ||||||||| |||||||| |||| |||||| || | || ||
Sbjct 113833 ACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 113892
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|| ||||| || || || || || |||||||| || | ||||| | |||||||||| |
Sbjct 113893 AGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCCTTGTCCTGG 113952
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| |||| ||| || | ||||| | || ||||||| |||||| |||||
Sbjct 113953 ATCTTA-GCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGTGATGGTTTT 114011
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| || | || |||||||||||||||||
Sbjct 114012 ACCAGTTAGGGTCTTCACAAATATCTGCAT 114041
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | |||| ||| | ||| ||||||||| ||||||||||||| |
Sbjct 106481 CCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGAC 106540
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || |||| |||| || || || ||||| || || || ||||| || | |||
Sbjct 106541 AAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGA 106600
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||| ||||| ||||| || | | | | | || ||| | ||| |||
Sbjct 106601 ATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACC 106660
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|||| ||||| || || || |||||||| ||||| || || ||||||
Sbjct 106661 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATT 106708
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | |||| ||| | ||| ||||||||| ||||||||||||| |
Sbjct 114727 CCACCACGTAGACGAAGAACCAGATGAAGTGTAGACTCCTTTTGGATGTTGTAATCGGAC 114786
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
||||| || |||| |||| || || || ||||| || || || ||||| || | |||
Sbjct 114787 AAGGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAGATTAAACGTTGCTGATCTGGTGGA 114846
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||| ||||| ||||| || | | | | | || ||| | ||| |||
Sbjct 114847 ATACCCTCTTTGTCTTGAATCTTGGCTTTTACATTCTCAATAGTATCGGATGGTTCAACC 114906
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|||| ||||| || || || |||||||| ||||| || || ||||||
Sbjct 114907 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCATT 114954
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||||| | ||| || ||||| || ||| ||||| ||||| ||||| || | |
Sbjct 106253 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 106312
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| |||||| || || || || || || || || || | ||
Sbjct 106313 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 106372
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | ||||| ||| ||| ||| |||| | | | | | || ||| | || ||
Sbjct 106373 ATTCCTTCCTTATCC-TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 106431
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||| |||||||||||||||||||| || || ||||||||
Sbjct 106432 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 106479
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||||| | ||| || ||||| || ||| ||||| ||||| ||||| || | |
Sbjct 114499 CCTCCACGTAGGCGCAAAACTAAATGCAATGTAGATTCCTTCTGAATATTGTAGTCAGAC 114558
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| |||||| || || || || || || || || || | ||
Sbjct 114559 AATGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGTGGG 114618
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | ||||| ||| ||| ||| |||| | | | | | || ||| | || ||
Sbjct 114619 ATTCCTTCCTTATCC-TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAAC 114677
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||| |||||||||||||||||||| || || ||||||||
Sbjct 114678 CTCCAAAGTGATGGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 114725
Score = 86.0 bits (94), Expect = 6e-12
Identities = 124/174 (71%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639
|||| || ||||||||||| ||||| ||||| || |||||||| | ||||| | ||||
Sbjct 113657 CGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCT 113716
Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699
|||| ||||| ||| | || | | |||||| | || ||||||| || |
Sbjct 113717 TGTCTTGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGTTA 113776
Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT-CTGTGCGCACACACA 35752
| ||||| || |||| || ||||| || || |||||| || ||||| || ||
Sbjct 113777 TAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTCCTCCGCGCAGACGCA 113830
>seq76387
Length=1185
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||||||||| |||||||| || | | ||| ||| |||| || |||||||| ||||| ||
Sbjct 224 CTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 283
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| |||| || ||||||||| |||||| ||||| | |
Sbjct 284 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATT 343
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||||| | |||||||| | |||||||| || || || | || || ||
Sbjct 344 CTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAAC 403
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 404 GAAGATCTGCAT 415
Score = 116 bits (128), Expect = 3e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||| | | ||| || |||| || |||||||| || || ||
Sbjct 797 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAA 856
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| || | || |||||||||| |||||| ||||| | |
Sbjct 857 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 916
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||||| | |||||||| | ||||| || || || || | || |||||
Sbjct 917 CTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 976
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 977 AAAGATCTGCAT 988
Score = 109 bits (120), Expect = 5e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
||||||| |||||||| ||| | ||| || |||| || || ||||| || || || |
Sbjct 571 CCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGA 630
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
| | ||||||||||||| |||| || ||||||||| |||||| ||||| | |
Sbjct 631 TGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCT 690
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||||| | |||||||| | |||||||| || || || | || || || |
Sbjct 691 CAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGA 750
Query 35727 ATATCTGCAT 35736
| ||||||||
Sbjct 751 AGATCTGCAT 760
>seq2574
Length=80092
Score = 118 bits (130), Expect = 1e-21
Identities = 140/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| ||| || ||||| |||| || |||||||| || || || |
Sbjct 58860 CCTTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 58919
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||| | || | || |||||||||| |||||| ||||| | |
Sbjct 58920 TCAGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCT 58979
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||||| | |||||||| | ||||| || || ||||| | || ||||| |
Sbjct 58980 CGATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGA 59039
Query 35727 ATATCTGCAT 35736
| ||||||||
Sbjct 59040 AGATCTGCAT 59049
>seq28390
Length=4902
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || ||||| || | | ||| || |||| || ||||| ||||| || ||
Sbjct 499 CTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGTTTACCGGCGAA 440
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | ||| | || |||||||||| ||||||| ||||| | |
Sbjct 439 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 380
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||| || | || ||||| | ||||| || || ||||| | || |||||
Sbjct 379 CTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCAC 320
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 319 AAAGATTTGCAT 308
>seq21746
Length=7614
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | ||||||||| || | || |||||||||||||||||| |||| |
Sbjct 2422 CCACCACGCAGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAC 2363
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| ||||| || || || ||||| || || || || | ||
Sbjct 2362 AAAGTACGACCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGT 2303
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | || || || ||| || ||| | | || | | ||||| | || |||
Sbjct 2302 ATACCTTCTTTATCTTGGATTTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACC 2243
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744
|||| ||||| || || ||||| | ||||| || || ||||||||| ||| ||
Sbjct 2242 TCCAAAGTGATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTGTTCG 2188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450305221483600
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