Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1573 84.2 3e-11 >seq1573 Length=117888 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 161201 CATGTGAAAGTATCTTTCGAG--GAACCTGAATATACAGCACAGACTGATGCTCTGGGAA 161258 |||||||||||||| ||||| || | ||||||||||| | ||||||| | || | Sbjct 13142 CATGTGAAAGTATCATTCGATTTGAGC--GAATATACAGCCGAAGTTGATGCTATTGGCA 13085 Query 161259 CCCTAAGAGTATTGGAGGCAGTTCGTCTCCTA-GGTATGACAGATAGGGTCCGTATCTAC 161317 | || | || |||| || || || | | | |||||| | | || ||| |||| Sbjct 13084 CGCTGCGCATACTGGATGCCGTACG-CACATGCGGTATGGAGAAAACTGTACGTTTCTAT 13026 Query 161318 CAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACA 161377 ||||||||||| |||||||| || ||| ||||| ||||| || || |||| Sbjct 13025 CAGGCATCCACTTCAGAGTTGTACGGCAAGGTGGTTGAGACGCCACAAAATGAGCAAACA 12966 Query 161378 CCTTTCTACCCACGATCTCCATATGG 161403 ||||| |||||||| || ||||| || Sbjct 12965 CCTTTTTACCCACGTTCGCCATACGG 12940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729138812519600