Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_027404.1
Length=167785
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 217 2e-51
seq85787 134 1e-26
>seq81708
Length=1085
Score = 217 bits (240), Expect = 2e-51
Identities = 185/228 (81%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 61041 TGCCATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 61100
||| |||||| || |||||||| ||||||| ||||| || |||||||| || || |||
Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292
Query 61101 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61160
|| | ||||||||| || ||||| ||||| || || ||||||| ||| ||||||||||||
Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352
Query 61161 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGA 61220
||||| || || |||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412
Query 61221 CCACCTTCAATTTTAACTGTAGGCTGTTGCTCAATTTCAATTTCACGG 61268
||||||||||| || || | ||||||| | ||||||||||
Sbjct 413 CCACCTTCAATACGCACCTGCGGTTTCTGCTCAAGTGGAATTTCACGG 460
>seq85787
Length=1013
Score = 134 bits (148), Expect = 1e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 61041 TGCCATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 61100
||| ||||||| || ||| || ||||| | || || || |||||| || |||
Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643
Query 61101 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 61160
|| ||||| ||||| || ||||| || || || ||||||||||||||||||||||| |||
Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703
Query 61161 GGATGCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGA 61220
||||| | | ||||| ||| | |||||| || ||||| |||||||| ||||||
Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763
Query 61221 CCACCTTCAATTTT 61234
|||||||| || ||
Sbjct 764 CCACCTTCGATGTT 777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 536202461634000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |