Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq81517 239 4e-58 seq22 212 5e-50 seq59797 122 7e-23 seq4297 89.7 4e-13 >seq81517 Length=1088 Score = 239 bits (264), Expect = 4e-58 Identities = 489/724 (68%), Gaps = 2/724 (0%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| |||||||||||||| | || ||| | | ||||||| || || | ||| Sbjct 1058 TTTCCACTGCTAACTACAAAACGCGTATTCTGGCGGGCCGTTGCAGAGGAGCTACTTTGG 999 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||| | | || ||| |||| || | | || ||| | | | ||||||||| | Sbjct 998 TTTGTTCACGGCCAGACTGATGCGAAAATACTAAAAGAGAAAAATATCCACATTTGGGAC 939 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871 | | | ||| || | | |||| || || || || || | || ||||||||| Sbjct 938 GGGAATAGTACTCGAGAGTTTTTGGATAAATGTGGTTTTCATAATCGCGAAGAAGGTGAT 879 Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA- 40930 | || || || ||||||||||||| ||| ||||||||||| |||||| || ||| | Sbjct 878 TTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTGGAGCCAAATATCGAAC-ATGCAA 820 Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATC 40990 | | |||| | | |||| | |||||| | || || || ||||| || | Sbjct 819 CGATAATTACTCGGGTGAAGGCGTAGATCAACTTCAAAATGTAATTGATACAATCCGAAA 760 Query 40991 CGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGAT 41050 | | || || || || |||||| ||| |||||||| || ||| | | || Sbjct 759 CAAACCGAATGATCGTCGCATAATAATGTCTGCGTGGAATCCCCTTGACATTCCGCAAAT 700 Query 41051 GGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110 |||| | || |||||||||| || || |||| |||| |||||||| ||||| || Sbjct 699 GGCACTACCTCCTTGTCATTGTCTAGCACAATTTTTCGTTGCAAATGGTGAGCTGTCTTG 640 Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 ||| ||||||||| | | |||||||||| | || || || || || || || ||| Sbjct 639 TCAGTTGTATCAACGTAGCGCTGACATGGGATTGGGCGTGCCATTCAATATCGCCTCTTA 580 Query 41171 TGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCA 41230 |||| || | || ||||||||||||||||| ||| | || || ||||| || || Sbjct 579 TGCTTTGTTAACATATATGATTGCACACGTGACCGGACTTCGTCCCGGAGAATTCGTGCA 520 Query 41231 CACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGAC 41290 ||| | || |||| ||| | || | ||||| || || || |||| |||||| | | Sbjct 519 CACTCTTGGTGATGCCCATGTCTATAACAATCATATTGAACCCTTAAAAGAACAGATAGC 460 Query 41291 ACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGA 41350 ||| ||||| | |||||||| | ||| |||| ||||| | || | ||||| || || Sbjct 459 ACGTAAACCCCGTCCATTTCCCAAACTAGTTATAAAACGGGAAGTGAAGAACATAGAAGA 400 Query 41351 TTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGA 41410 |||| || |||| |||| ||| ||||||||| || ||||||||||| ||||| Sbjct 399 TTTTACATTCAATGACTTTGAAGTTCTCGATTACAAACCCTACCCTAAAATATCGATGGA 340 Query 41411 CATG 41414 ||| Sbjct 339 AATG 336 >seq22 Length=933496 Score = 212 bits (234), Expect = 5e-50 Identities = 427/626 (68%), Gaps = 12/626 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| || ||||| || ||| || || || |||||||| || ||| || || Sbjct 329200 GTTTTGGCATTCTTTGCCGCCTCCGATGGTATTGTGAATGAAAACTTAGTTGAACGCTTC 329259 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 |||||||||||| | |||| || || || || ||||| |||||||| ||||| || Sbjct 329260 AGCCAAGAAGTTCAAATCACAGAGGCGCGTTGCTTCTATGGATTTCAAATCGCCATGGAG 329319 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||| | ||||| ||||||||||| | | || ||||| || || || ||||| | | Sbjct 329320 AATGTGCATTCTGAAATGTACAGCATATTAATTGATACATATATTAAGGATGGCAAGCAA 329379 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089 | | || ||||| ||||| || || || | ||||| |||| | || || || ||| Sbjct 329380 AGGGATTACTTGTTCAATGCTATTGAGACGATGCCTGCTGTTAAGCGCAAGGCTGATTGG 329439 Query 44090 GCCCTTAAATGGA-TAAATTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 || || |||| | || |||| | ||||| ||||| | | || ||||| Sbjct 329440 GCACTGGCGTGGATTTCATCGAAATCGGCCAACTTTGGCGAACGTATAATAGCATTTGCC 329499 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | || ||||||||||||||| || ||||| | || |||||| | |||||||| Sbjct 329500 GCGGTTGAAGGCATTTTCTTTAGTGGCAGTTTTGCTTCAATCTTTTGGCTGAAGAAACGG 329559 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || | |||||||| ||||| || || |||||| |||| | || ||||| |||||| Sbjct 329560 GGCCTAATGCCTGGTTTGACATTCTCTAATGAGCTAATTTCAAGGGACGAAGGATTACAT 329619 Query 44267 TGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGAC 44325 ||||||||||||||| || | | | | || | | | |||| || ||| ||| Sbjct 329620 TGCGATTTTGCTTGCCTGATGTTCCAACACCT--CATTC-AGAAGC---CAAGTAGGGAC 329673 Query 44326 --AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCA 44383 |||| || || ||| || || || || || ||||||||||| | || || Sbjct 329674 CGTATTATTGAAATCATTGCTGAAGCTGTTAAAATTGAACAAGAATTCTTAACTGATGCC 329733 Query 44384 TTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATT 44443 |||||||| ||||| || || |||||| | | ||| | |||||||||| | Sbjct 329734 TTACCTGTGAATTTGATTGGCATGAATTGCCAACTAATGTCTGATTATATTGAATTTGTG 329793 Query 44444 GCAGATCGTTTACTTTTGGAACTGGG 44469 |||||||| || || | || ||||| Sbjct 329794 GCAGATCGCTTGCTGGTCGAGCTGGG 329819 >seq59797 Length=1646 Score = 122 bits (134), Expect = 7e-23 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 ||||| || || || ||||| | || ||| ||||| | ||||| |||||||| |||| Sbjct 1426 TTGTTCAACGCTATTGAAACTATTCCATGC-ATTAAGCGCAAAGCTGACTGGGCAGTTAA 1484 Query 44098 ATGGATAAATTCA---AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 ||||| ||| || | || ||||| || |||| || || ||||| | || || Sbjct 1485 GTGGATCAATGACGAGAAAGCATCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGA 1544 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| |||||||| || || || ||||| |||| || ||| | ||||| |||||||||| Sbjct 1545 AGGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGAT 1604 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 |||||| ||||| || || ||||| ||||| Sbjct 1605 GCCTGGTTTGACATTCTCTAATGAATTAAT 1634 >seq4297 Length=52141 Score = 89.7 bits (98), Expect = 4e-13 Identities = 193/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| |||||| || || ||||||||| | || |||| |||||||| Sbjct 37829 ATTGGTGGCTTGGATAAAGAATTCAATGCCATCTTTCGTCGTGCTTTTGCATCGCGTGTC 37888 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || | | || | | | || |||| || ||||| || || | |||| ||| Sbjct 37889 TTCCCCCCTGAGCTTGTGGAGCAGCTGGGCTGCAAACACGTCAAAGGTATACTGCTGTAT 37948 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || ||||| ||| ||| ||||| | || || | || || | | || | || Sbjct 37949 GGCCCACCCGGTACTGGTAAAACGCTGATGGCACGTCAAATTGGCAC--TATGTTGAATG 38006 Query 19423 CAACCT--CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGG 19480 | | || |||||||| |||||||| |||| || | ||||||||||| |||||| Sbjct 38007 CGCGCGAACCAAAAATTGTCAATGGTCCACAAATTTTGGACAAATATGTAGGCGAATCGG 38066 Query 19481 AAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 ||| |||| ||||||| | |||||||| || || || ||| | ||| Sbjct 38067 AAGCAAATATACGACGACTCTTTGCTGAGGCCGAGGAGGAAGAGAAA 38113 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 ||| ||||| ||||| || || |||||| | || | ||| | || || || | || || Sbjct 39046 TGGCGTACACGACACAGTGGTTAATCAATTGCTAGCCAAAATCGATGGCGTGGAACAGCT 39105 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || ||||| || |||||||| ||||| || |||| || | || ||| || || | Sbjct 39106 AAACAATATATTGGTTATTGGTATGACCAACAGACGTGACATGATTGACGAAGCTTTGAT 39165 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||||||||||| |||||| | | || || || | | | || | ||| || || || Sbjct 39166 GCGACCCGGTCGCTTGGAAGTGCAAATGGAGATCAGCCTGCCGAACGAAGAGGGTCGCGT 39225 Query 19791 GGAAATTTTAAACATACATACA 19812 | ||||| | |||||||| ||| Sbjct 39226 GCAAATTCTGAACATACACACA 39247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036170953350