Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq81517 239 4e-58
seq22 212 5e-50
seq59797 122 7e-23
seq4297 89.7 4e-13
>seq81517
Length=1088
Score = 239 bits (264), Expect = 4e-58
Identities = 489/724 (68%), Gaps = 2/724 (0%)
Strand=Plus/Minus
Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751
||||| |||||||||||||| | || ||| | | ||||||| || || | |||
Sbjct 1058 TTTCCACTGCTAACTACAAAACGCGTATTCTGGCGGGCCGTTGCAGAGGAGCTACTTTGG 999
Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811
||| | | || ||| |||| || | | || ||| | | | ||||||||| |
Sbjct 998 TTTGTTCACGGCCAGACTGATGCGAAAATACTAAAAGAGAAAAATATCCACATTTGGGAC 939
Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871
| | | ||| || | | |||| || || || || || | || |||||||||
Sbjct 938 GGGAATAGTACTCGAGAGTTTTTGGATAAATGTGGTTTTCATAATCGCGAAGAAGGTGAT 879
Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA- 40930
| || || || ||||||||||||| ||| ||||||||||| |||||| || ||| |
Sbjct 878 TTGGGCCCCGTGTATGGATTTCAGTGGCGCCATTTTGGAGCCAAATATCGAAC-ATGCAA 820
Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATC 40990
| | |||| | | |||| | |||||| | || || || ||||| || |
Sbjct 819 CGATAATTACTCGGGTGAAGGCGTAGATCAACTTCAAAATGTAATTGATACAATCCGAAA 760
Query 40991 CGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGAT 41050
| | || || || || |||||| ||| |||||||| || ||| | | ||
Sbjct 759 CAAACCGAATGATCGTCGCATAATAATGTCTGCGTGGAATCCCCTTGACATTCCGCAAAT 700
Query 41051 GGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110
|||| | || |||||||||| || || |||| |||| |||||||| ||||| ||
Sbjct 699 GGCACTACCTCCTTGTCATTGTCTAGCACAATTTTTCGTTGCAAATGGTGAGCTGTCTTG 640
Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170
||| ||||||||| | | |||||||||| | || || || || || || || |||
Sbjct 639 TCAGTTGTATCAACGTAGCGCTGACATGGGATTGGGCGTGCCATTCAATATCGCCTCTTA 580
Query 41171 TGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCA 41230
|||| || | || ||||||||||||||||| ||| | || || ||||| || ||
Sbjct 579 TGCTTTGTTAACATATATGATTGCACACGTGACCGGACTTCGTCCCGGAGAATTCGTGCA 520
Query 41231 CACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGAC 41290
||| | || |||| ||| | || | ||||| || || || |||| |||||| | |
Sbjct 519 CACTCTTGGTGATGCCCATGTCTATAACAATCATATTGAACCCTTAAAAGAACAGATAGC 460
Query 41291 ACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGA 41350
||| ||||| | |||||||| | ||| |||| ||||| | || | ||||| || ||
Sbjct 459 ACGTAAACCCCGTCCATTTCCCAAACTAGTTATAAAACGGGAAGTGAAGAACATAGAAGA 400
Query 41351 TTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGA 41410
|||| || |||| |||| ||| ||||||||| || ||||||||||| |||||
Sbjct 399 TTTTACATTCAATGACTTTGAAGTTCTCGATTACAAACCCTACCCTAAAATATCGATGGA 340
Query 41411 CATG 41414
|||
Sbjct 339 AATG 336
>seq22
Length=933496
Score = 212 bits (234), Expect = 5e-50
Identities = 427/626 (68%), Gaps = 12/626 (2%)
Strand=Plus/Plus
Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909
|||||||| || ||||| || ||| || || || |||||||| || ||| || ||
Sbjct 329200 GTTTTGGCATTCTTTGCCGCCTCCGATGGTATTGTGAATGAAAACTTAGTTGAACGCTTC 329259
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
|||||||||||| | |||| || || || || ||||| |||||||| ||||| ||
Sbjct 329260 AGCCAAGAAGTTCAAATCACAGAGGCGCGTTGCTTCTATGGATTTCAAATCGCCATGGAG 329319
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029
||| | ||||| ||||||||||| | | || ||||| || || || ||||| | |
Sbjct 329320 AATGTGCATTCTGAAATGTACAGCATATTAATTGATACATATATTAAGGATGGCAAGCAA 329379
Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGG 44089
| | || ||||| ||||| || || || | ||||| |||| | || || || |||
Sbjct 329380 AGGGATTACTTGTTCAATGCTATTGAGACGATGCCTGCTGTTAAGCGCAAGGCTGATTGG 329439
Query 44090 GCCCTTAAATGGA-TAAATTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146
|| || |||| | || |||| | ||||| ||||| | | || |||||
Sbjct 329440 GCACTGGCGTGGATTTCATCGAAATCGGCCAACTTTGGCGAACGTATAATAGCATTTGCC 329499
Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206
| || ||||||||||||||| || ||||| | || |||||| | ||||||||
Sbjct 329500 GCGGTTGAAGGCATTTTCTTTAGTGGCAGTTTTGCTTCAATCTTTTGGCTGAAGAAACGG 329559
Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266
|| | |||||||| ||||| || || |||||| |||| | || ||||| ||||||
Sbjct 329560 GGCCTAATGCCTGGTTTGACATTCTCTAATGAGCTAATTTCAAGGGACGAAGGATTACAT 329619
Query 44267 TGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTA-AGAC 44325
||||||||||||||| || | | | | || | | | |||| || ||| |||
Sbjct 329620 TGCGATTTTGCTTGCCTGATGTTCCAACACCT--CATTC-AGAAGC---CAAGTAGGGAC 329673
Query 44326 --AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCA 44383
|||| || || ||| || || || || || ||||||||||| | || ||
Sbjct 329674 CGTATTATTGAAATCATTGCTGAAGCTGTTAAAATTGAACAAGAATTCTTAACTGATGCC 329733
Query 44384 TTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATT 44443
|||||||| ||||| || || |||||| | | ||| | |||||||||| |
Sbjct 329734 TTACCTGTGAATTTGATTGGCATGAATTGCCAACTAATGTCTGATTATATTGAATTTGTG 329793
Query 44444 GCAGATCGTTTACTTTTGGAACTGGG 44469
|||||||| || || | || |||||
Sbjct 329794 GCAGATCGCTTGCTGGTCGAGCTGGG 329819
>seq59797
Length=1646
Score = 122 bits (134), Expect = 7e-23
Identities = 155/210 (74%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097
||||| || || || ||||| | || ||| ||||| | ||||| |||||||| ||||
Sbjct 1426 TTGTTCAACGCTATTGAAACTATTCCATGC-ATTAAGCGCAAAGCTGACTGGGCAGTTAA 1484
Query 44098 ATGGATAAATTCA---AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154
||||| ||| || | || ||||| || |||| || || ||||| | || ||
Sbjct 1485 GTGGATCAATGACGAGAAAGCATCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGA 1544
Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214
||| |||||||| || || || ||||| |||| || ||| | ||||| ||||||||||
Sbjct 1545 AGGTATTTTCTTCTCTGGTTCATTTGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGAT 1604
Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244
|||||| ||||| || || ||||| |||||
Sbjct 1605 GCCTGGTTTGACATTCTCTAATGAATTAAT 1634
>seq4297
Length=52141
Score = 89.7 bits (98), Expect = 4e-13
Identities = 193/287 (67%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
||||| || ||| |||||| || || ||||||||| | || |||| ||||||||
Sbjct 37829 ATTGGTGGCTTGGATAAAGAATTCAATGCCATCTTTCGTCGTGCTTTTGCATCGCGTGTC 37888
Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362
|| | | || | | | || |||| || ||||| || || | |||| |||
Sbjct 37889 TTCCCCCCTGAGCTTGTGGAGCAGCTGGGCTGCAAACACGTCAAAGGTATACTGCTGTAT 37948
Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422
|| ||||| ||| ||| ||||| | || || | || || | | || | ||
Sbjct 37949 GGCCCACCCGGTACTGGTAAAACGCTGATGGCACGTCAAATTGGCAC--TATGTTGAATG 38006
Query 19423 CAACCT--CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGG 19480
| | || |||||||| |||||||| |||| || | ||||||||||| ||||||
Sbjct 38007 CGCGCGAACCAAAAATTGTCAATGGTCCACAAATTTTGGACAAATATGTAGGCGAATCGG 38066
Query 19481 AAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527
||| |||| ||||||| | |||||||| || || || ||| | |||
Sbjct 38067 AAGCAAATATACGACGACTCTTTGCTGAGGCCGAGGAGGAAGAGAAA 38113
Score = 89.7 bits (98), Expect = 4e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
||| ||||| ||||| || || |||||| | || | ||| | || || || | || ||
Sbjct 39046 TGGCGTACACGACACAGTGGTTAATCAATTGCTAGCCAAAATCGATGGCGTGGAACAGCT 39105
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
|| ||||| || |||||||| ||||| || |||| || | || ||| || || |
Sbjct 39106 AAACAATATATTGGTTATTGGTATGACCAACAGACGTGACATGATTGACGAAGCTTTGAT 39165
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
||||||||||| |||||| | | || || || | | | || | ||| || || ||
Sbjct 39166 GCGACCCGGTCGCTTGGAAGTGCAAATGGAGATCAGCCTGCCGAACGAAGAGGGTCGCGT 39225
Query 19791 GGAAATTTTAAACATACATACA 19812
| ||||| | |||||||| |||
Sbjct 39226 GCAAATTCTGAACATACACACA 39247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397036170953350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |