Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq81708 205 1e-47 seq85787 125 8e-24 >seq81708 Length=1085 Score = 205 bits (226), Expect = 1e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 60761 TGCCATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60820 ||| |||||| || || ||||| ||||||| ||||| || |||||||| || || ||| Sbjct 233 TGCAATTACAGGCTTTCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTC 292 Query 60821 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60880 || | ||||||||| || ||||| ||||| || || ||||||| ||| |||||||||||| Sbjct 293 AGCGCGTTAAAGCGCACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCC 352 Query 60881 GGATGCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGA 60940 ||||| || || |||||||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 353 GGATGGTTCACGGCATCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGA 412 Query 60941 CCACCTTCAATTTTAACTGTAGGCTGTTGCTCAATTTCAATTTCACGG 60988 ||||||||||| || || | ||||||| | |||||||||| Sbjct 413 CCACCTTCAATACGCACCTGCGGTTTCTGCTCAAGTGGAATTTCACGG 460 >seq85787 Length=1013 Score = 125 bits (138), Expect = 8e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 60761 TGCCATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 60820 ||| ||||||| || || || ||||| | || || || |||||| || ||| Sbjct 584 TGCGATTACAACGACTGGGTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTG 643 Query 60821 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 60880 || ||||| ||||| || ||||| || || || ||||||||||||||||||||||| ||| Sbjct 644 AGCGAGTTGAAGCGTACAGCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCC 703 Query 60881 GGATGCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGA 60940 ||||| | | ||||| ||| | || ||| || ||||| |||||||| |||||| Sbjct 704 GGATGTTCCATGGCATCCAACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGA 763 Query 60941 CCACCTTCAATTTT 60954 |||||||| || || Sbjct 764 CCACCTTCGATGTT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535083675014000