Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7596 123 3e-23 seq3737 107 2e-18 seq40302 105 8e-18 seq85186 91.5 2e-13 >seq7596 Length=30452 Score = 123 bits (136), Expect = 3e-23 Identities = 272/401 (68%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 ||||||||||| | || ||| | ||||| || || ||||| || || ||| Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 || || |||||||| || || ||||||||| |||||| || | ||| | | Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242 Query 9280 TCAAAAATTACCGCGAGTCTTAC---GGACTGTTTGC-GTGCTCCGGAATCCTCTTCAAC 9335 || |||||||||||||| ||| | |||||||| ||| |||||||| |||||| Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTG-AATGGAATCCTATTCAAC 25301 Query 9336 CATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTA-CCGAGG-GTATCA 9393 ||||||||||| | |||| | | |||||||||| || || | |||||| || | Sbjct 25302 CATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCG 25361 Query 9394 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 9453 | | ||| || || |||| ||||| || |||| ||| | || || | ||| Sbjct 25362 A--AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAG 25419 Query 9454 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 9513 | ||||| || || ||||| |||||||| |||||| | ||| | || ||||| | Sbjct 25420 ACTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACC 25479 Query 9514 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 | ||||| | ||| | || || || || | ||||||||| Sbjct 25480 CGGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520 >seq3737 Length=58963 Score = 107 bits (118), Expect = 2e-18 Identities = 277/415 (67%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 ||||| || ||||| ||||| |||||||| || || | || || || ||||| || || Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562 ||||| |||| || || | | | ||| ||||| |||||||| ||| | Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATC--ATTTGCTGGCATACCACC-AGCACTGCGTTG 11619 ||||| | || |||||| || || | | || | || | | | | ||| ||| | Sbjct 33027 CTGATTGAGCGT--GTTCTC-CTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTT 32971 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 || ||||| ||||| || |||||||||| || || || || | ||| || || Sbjct 32970 TCGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCAT 32911 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 |||| | ||| ||||| | | | |||||| || ||||||||||||| ||| | | Sbjct 32910 GGCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGA 32851 Query 11740 GGCAGAGCACTGGA-TGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 | |||| |||| | |||| || || |||| ||| || || ||||| ||| || | | Sbjct 32850 GCCAGAA-ACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACG 32792 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || || || || || | || | ||| ||| ||| ||||||||||| Sbjct 32791 TTTTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737 >seq40302 Length=2817 Score = 105 bits (116), Expect = 8e-18 Identities = 354/533 (66%), Gaps = 21/533 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||||||||| |||||||| || || ||||| || | ||||| Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||||||| |||||||| |||| | | | | ||||| || | | || || | Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGCC 2064 Query 122489 GATCCGACACA-TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 | | || | || |||||||||||| ||||||| ||| |||||| || |||||| Sbjct 2065 GGT-CGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT-GGC 122606 || || ||||| || |||| | | ||| || || ||||| || | ||| || Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGC 2183 Query 122607 GTGGATAGTT--TCGGTAGTGGGTCTATTACGCAAAGTCTTG-AAGAGCTCCACGGCAAA 122663 | | || ||| || | ||| | | || | ||||| |||||| Sbjct 2184 ACCACCCGCTCATC-GTA--CGGCTTCTTAATC-AGGTGGCGAAAGAGGAGACAGGCAAA 2239 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || ||| || ||||| || ||| || || ||||| |||| || || ||||| Sbjct 2240 GTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCAT 2299 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGC--GCAGAATGACCCGGAGAAGAAGATACCC 122781 || || |||||||||| |||| | || || ||| || || ||| ||||||||| ||| Sbjct 2300 CAGGCCGCGCTTCTTCAGCCAAAAGAT-GCTGGCA-AAGGAGCCGCTGAAGAAGATGCCC 2357 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTT--GCATCAAAC 122838 ||||| || || || | ||||| ||||| |||| ||| ||| || | | Sbjct 2358 TCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTC 2417 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || ||| ||||| |||||||||||| | | || || | || |||||||| Sbjct 2418 CAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470 >seq85186 Length=1023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGA 110766 || ||||||| || ||||||||||||||||||||| | ||||| ||||||| || || Sbjct 763 TAAATGTTTGACGTATATGGTTCAAAGCATTCATTA-AATCCAAGTATTTGTGACGTTGA 821 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAG 110793 |||||||||||||||||| | |||||| Sbjct 822 GGCTGTTGGCATTGGTGCAACCAAAAG 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627351605832000