Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq7596 123 3e-23
seq3737 107 2e-18
seq40302 105 8e-18
seq85186 91.5 2e-13
>seq7596
Length=30452
Score = 123 bits (136), Expect = 3e-23
Identities = 272/401 (68%), Gaps = 9/401 (2%)
Strand=Plus/Plus
Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219
||||||||||| | || ||| | ||||| || || ||||| || || |||
Sbjct 25123 TCTATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGA 25182
Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279
|| || |||||||| || || ||||||||| |||||| || | ||| | |
Sbjct 25183 CCACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTG 25242
Query 9280 TCAAAAATTACCGCGAGTCTTAC---GGACTGTTTGC-GTGCTCCGGAATCCTCTTCAAC 9335
|| |||||||||||||| ||| | |||||||| ||| |||||||| ||||||
Sbjct 25243 TCGTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTG-AATGGAATCCTATTCAAC 25301
Query 9336 CATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTA-CCGAGG-GTATCA 9393
||||||||||| | |||| | | |||||||||| || || | |||||| || |
Sbjct 25302 CATGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCG 25361
Query 9394 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 9453
| | ||| || || |||| ||||| || |||| ||| | || || | |||
Sbjct 25362 A--AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAG 25419
Query 9454 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 9513
| ||||| || || ||||| |||||||| |||||| | ||| | || ||||| |
Sbjct 25420 ACTGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACC 25479
Query 9514 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554
| ||||| | ||| | || || || || | |||||||||
Sbjct 25480 CGGACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520
>seq3737
Length=58963
Score = 107 bits (118), Expect = 2e-18
Identities = 277/415 (67%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502
||||| || ||||| ||||| |||||||| || || | || || || ||||| || ||
Sbjct 33147 GATCTGTCGGTCAAAGCGACCTGGGCGAAGTAGTGCCTTGTCGAGAATGTCCACTCGGTT 33088
Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562
||||| |||| || || | | | ||| ||||| |||||||| ||| |
Sbjct 33087 GGTGGCGGCAAGTACGACCACGTTCGAGGAGGTGTTGAAGCCGTCCATCTCCACGAGCAG 33028
Query 11563 TTGATTAATTGTTTGTTCTCTCTCATC--ATTTGCTGGCATACCACC-AGCACTGCGTTG 11619
||||| | || |||||| || || | | || | || | | | | ||| ||| |
Sbjct 33027 CTGATTGAGCGT--GTTCTC-CTGCTCCGAGTGGCCGCCAAAGCTGCGACCACCGCGCTT 32971
Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679
|| ||||| ||||| || |||||||||| || || || || | ||| || ||
Sbjct 32970 TCGACCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCAT 32911
Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739
|||| | ||| ||||| | | | |||||| || ||||||||||||| ||| | |
Sbjct 32910 GGCAAACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGA 32851
Query 11740 GGCAGAGCACTGGA-TGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798
| |||| |||| | |||| || || |||| ||| || || ||||| ||| || | |
Sbjct 32850 GCCAGAA-ACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACG 32792
Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
| || || || || || || | || | ||| ||| ||| |||||||||||
Sbjct 32791 TTTTGCCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737
>seq40302
Length=2817
Score = 105 bits (116), Expect = 8e-18
Identities = 354/533 (66%), Gaps = 21/533 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
|| || ||||| |||||||||||||| |||||||| || || ||||| || | |||||
Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488
|||||||| |||||||| |||| | | | | ||||| || | | || || |
Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGCC 2064
Query 122489 GATCCGACACA-TACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547
| | || | || |||||||||||| ||||||| ||| |||||| || ||||||
Sbjct 2065 GGT-CGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCG 2123
Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT-GGC 122606
|| || ||||| || |||| | | ||| || || ||||| || | ||| ||
Sbjct 2124 ACCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGC 2183
Query 122607 GTGGATAGTT--TCGGTAGTGGGTCTATTACGCAAAGTCTTG-AAGAGCTCCACGGCAAA 122663
| | || ||| || | ||| | | || | ||||| ||||||
Sbjct 2184 ACCACCCGCTCATC-GTA--CGGCTTCTTAATC-AGGTGGCGAAAGAGGAGACAGGCAAA 2239
Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723
|| ||| || ||||| || ||| || || ||||| |||| || || |||||
Sbjct 2240 GTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCAT 2299
Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGC--GCAGAATGACCCGGAGAAGAAGATACCC 122781
|| || |||||||||| |||| | || || ||| || || ||| ||||||||| |||
Sbjct 2300 CAGGCCGCGCTTCTTCAGCCAAAAGAT-GCTGGCA-AAGGAGCCGCTGAAGAAGATGCCC 2357
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTT--GCATCAAAC 122838
||||| || || || | ||||| ||||| |||| ||| ||| || | |
Sbjct 2358 TCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTC 2417
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|| ||| ||||| |||||||||||| | | || || | || ||||||||
Sbjct 2418 CAGGCCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGC 2470
>seq85186
Length=1023
Score = 91.5 bits (100), Expect = 2e-13
Identities = 74/87 (85%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGA 110766
|| ||||||| || ||||||||||||||||||||| | ||||| ||||||| || ||
Sbjct 763 TAAATGTTTGACGTATATGGTTCAAAGCATTCATTA-AATCCAAGTATTTGTGACGTTGA 821
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAG 110793
|||||||||||||||||| | ||||||
Sbjct 822 GGCTGTTGGCATTGGTGCAACCAAAAG 848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627351605832000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |