Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq40302 122 1e-22
seq7596 91.5 2e-13
>seq40302
Length=2817
Score = 122 bits (134), Expect = 1e-22
Identities = 355/538 (66%), Gaps = 13/538 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || || |||||||| ||||| || ||||| || |||| |||||| | ||||||
Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
|| ||||| || ||||| ||| | | ||| ||||| || | || || || |
Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGCC 2064
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | | ||||||||||||| |||||| |||| |||||| || ||||||
Sbjct 2065 GGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCGA 2124
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGCG 129964
|| || ||||| || |||| ||| ||| ||| || || || | ||| ||
Sbjct 2125 CCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGCA 2184
Query 129965 TGA-ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTG-AAGAGTTCCACGGCAAACT 130022
| | || ||| | || | || | | || | ||||| |||||| |
Sbjct 2185 CCACCCGCTCATCGTAC--GGCTTCTTAATC-AGGTGGCGAAAGAGGAGACAGGCAAAGT 2241
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| || |||||||| ||| ||| || ||||| |||| ||| || ||||| |
Sbjct 2242 CGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCATCA 2301
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| || |||||||||| ||| || || ||| ||||| ||||||||| |||||||
Sbjct 2302 GGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAGATGCCCTCCA 2361
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT---GTATCAAACCACT 130199
| ||||| || | ||| ||||| ||||||| | | ||| | | |||
Sbjct 2362 CGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTCCAGG 2421
Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257
||| ||||||| |||||| ||| ||| || || | |||||||| || | |||||
Sbjct 2422 CCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGCGTTGAAGAG 2479
>seq7596
Length=30452
Score = 91.5 bits (100), Expect = 2e-13
Identities = 262/397 (66%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 11817 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCACAAAATGAGGAGACGCCCTTCTATCC 11875
|| ||| | ||||| ||||| ||| |||||| || ||| || || ||||| ||
Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198
Query 11876 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGA 11935
|||||| || || ||| |||||| || | ||| | || |||||||| ||
Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258
Query 11936 ATCCTATG---GTCTCTTTGC-GTGCTCTGGTATTCTCTTCAACCACGAGTCACCCCGTC 11991
|| || |||| ||||| ||| ||| || || |||||||| || ||||| |||
Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAA-TGGAATCCTATTCAACCATGAATCACCTCGTA 25317
Query 11992 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGGCGGGTG 12051
| ||| ||| ||||| | || |||||| ||| | | ||| || |
Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377
Query 12052 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGG 12111
|| ||| ||||| || |||| |||||| || | | | |||||||| ||||| |
Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437
Query 12112 ACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCG 12171
|||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | |
Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497
Query 12172 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208
| || || || | || || || | ||||| || ||
Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617765202765200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |