Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq40302 122 1e-22 seq7596 91.5 2e-13 >seq40302 Length=2817 Score = 122 bits (134), Expect = 1e-22 Identities = 355/538 (66%), Gaps = 13/538 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || |||||||| ||||| || ||||| || |||| |||||| | |||||| Sbjct 1947 TACTCGCCGACGCGCTTCTCAAAGAAATTGGTCTTTCCCTCCAGGCTGATCTGCTCCATG 2006 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || ||||| || ||||| ||| | | ||| ||||| || | || || || | Sbjct 2007 AAGTCAAAGGGATTCTTGACGTTGTAGTACTTG--GGCACGCCGAGCTCCACCAGCAGCC 2064 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | | ||||||||||||| |||||| |||| |||||| || |||||| Sbjct 2065 GGTCGGCGCAGTACTCAATGTACGTGGACATCAGCTCGTTGTTCATGCCAATGAGGGCGA 2124 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT-GGCG 129964 || || ||||| || |||| ||| ||| ||| || || || | ||| || Sbjct 2125 CCGGAAGGGCGTCAGTGAGGAACTCCTGCTCGATGCGGACGGCCTCGTTGATGATCTGCA 2184 Query 129965 TGA-ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTG-AAGAGTTCCACGGCAAACT 130022 | | || ||| | || | || | | || | ||||| |||||| | Sbjct 2185 CCACCCGCTCATCGTAC--GGCTTCTTAATC-AGGTGGCGAAAGAGGAGACAGGCAAAGT 2241 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| ||| ||| || ||||| |||| ||| || ||||| | Sbjct 2242 CGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCCCGGCATCA 2301 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||||| ||| || || ||| ||||| ||||||||| ||||||| Sbjct 2302 GGCCGCGCTTCTTCAGCCAAAAGATGCTGGCAAAGGAGCCGCTGAAGAAGATGCCCTCCA 2361 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT---GTATCAAACCACT 130199 | ||||| || | ||| ||||| ||||||| | | ||| | | ||| Sbjct 2362 CGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGCGGCCGTCCAGG 2421 Query 130200 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||| ||||||| |||||| ||| ||| || || | |||||||| || | ||||| Sbjct 2422 CCATGGCCCACTTCGCCTTCTTCGCGACGCAGGGCATCGTCTGGATGGCGTTGAAGAG 2479 >seq7596 Length=30452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 262/397 (66%), Gaps = 7/397 (2%) Strand=Plus/Plus Query 11817 TCGGAGATGTTTGGTAAAGTTAGGGA-ATCCCCACAAAATGAGGAGACGCCCTTCTATCC 11875 || ||| | ||||| ||||| ||| |||||| || ||| || || ||||| || Sbjct 25140 TCTGAGCTTTTTGGGAAAGTACAGGAGATCCCC-CAGCGAGAGACCACTCCATTCTACCC 25198 Query 11876 ACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGA 11935 |||||| || || ||| |||||| || | ||| | || |||||||| || Sbjct 25199 TCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTCGTCAATTACCGCGA 25258 Query 11936 ATCCTATG---GTCTCTTTGC-GTGCTCTGGTATTCTCTTCAACCACGAGTCACCCCGTC 11991 || || |||| ||||| ||| ||| || || |||||||| || ||||| ||| Sbjct 25259 GTCATACCCAAGTCTGTTTGCTGTGAA-TGGAATCCTATTCAACCATGAATCACCTCGTA 25317 Query 11992 GTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTGGCGGGTG 12051 | ||| ||| ||||| | || |||||| ||| | | ||| || | Sbjct 25318 GAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGAAGATCTACCTTGGAG 25377 Query 12052 AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGG 12111 || ||| ||||| || |||| |||||| || | | | |||||||| ||||| | Sbjct 25378 AGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGACTGGGGCCATGCTCGTG 25437 Query 12112 ACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCG 12171 |||| ||||||||||||||| | | | || |||||| | ||||||| | |||| | | Sbjct 25438 ACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCGGACGACTTTGTCATTG 25497 Query 12172 CGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 | || || || | || || || | ||||| || || Sbjct 25498 CCACTGGAGAAGCGCATTCAGTGCGAGAGTTTGTCGA 25534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617765202765200