Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq13731 122 1e-22
seq7596 105 8e-18
seq59797 86.0 7e-12
seq3737 86.0 7e-12
>seq13731
Length=15303
Score = 122 bits (134), Expect = 1e-22
Identities = 448/693 (65%), Gaps = 23/693 (3%)
Strand=Plus/Minus
Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974
||||| |||||||| || ||| | ||||| || |||||||| ||| |||||||| |
Sbjct 1626 GAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAA 1567
Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034
||| | || || || | |||||| || || ||||| | |||| | | |
Sbjct 1566 AATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCT 1507
Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094
|||||| |||||| || ||| | |||||||||||| | || || ||| || ||
Sbjct 1506 GATGAGGTGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGA- 1448
Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154
||| || | |||| || ||| | ||||| || |||||||| || ||| |
Sbjct 1447 --AAAAACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTG 1390
Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGA 105212
|| | | | ||||| | |||| || ||| ||| || || ||||| || | |
Sbjct 1389 AATAAAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTA 1332
Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272
||||||||||||| || |||| || || ||| | || || | | || ||| |||
Sbjct 1331 GACACCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATGCGCT 1272
Query 105273 ACGCATTTGATTCCGACGAAG----CGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328
| | | || ||| ||| | ||||||| | | || || |||||
Sbjct 1271 ATCCGTACGAAAGCGAACAAGCATTCCTTTTAAATCAA----CAGGTTTTCGAAACCATT 1216
Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388
||| | | || | || || |||| || ||||| ||| | ||| | ||||||||
Sbjct 1215 TATTATGGTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACT 1156
Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 105447
| ||| || | ||||| || |||||| | || |||| ||| |||||||| || |
Sbjct 1155 TATGAAGGCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGGATAAGAAGCC 1097
Query 105448 CA---AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504
|| |||| || ||||| || | ||||| || || || | ||| || |
Sbjct 1096 CACTGAGCT---CTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAG 1040
Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564
|| ||||| | || || ||||| || || || || || |||||| |||| |||||
Sbjct 1039 GAATTCCCTCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAA 980
Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTA 105597
||| | || ||||||||||| | ||||||||
Sbjct 979 TGAGTCATTCGAACCCTACACTTCTAACATCTA 947
>seq7596
Length=30452
Score = 105 bits (116), Expect = 8e-18
Identities = 267/399 (67%), Gaps = 9/399 (2%)
Strand=Plus/Plus
Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297
|| |||||| ||||| ||| | ||||| ||||| | || | || || |||
Sbjct 25125 TATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGACC 25184
Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357
|| || |||||||| || || ||||||||| |||||| || | ||| | |||
Sbjct 25185 ACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTC 25244
Query 7358 AAAAATTACCGCGAGTCTTAC---GGACTGTTTGC-GTGCTCCGGAATCCTCTTCAACCA 7413
|||||||||||||| ||| | |||||||| ||| |||||||| ||||||||
Sbjct 25245 GTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTG-AATGGAATCCTATTCAACCA 25303
Query 7414 TGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA-CCGAGG-GTATCAAA 7471
||||||||| | |||| | | ||||| || | || || | |||||| || | |
Sbjct 25304 TGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGA- 25362
Query 7472 CAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGAT 7531
| ||| || || |||| ||||| || |||| ||| | || || ||||
Sbjct 25363 -AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGAC 25421
Query 7532 TGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC 7591
||||| || || ||||| |||||||| |||||| | ||| | || ||||| | |
Sbjct 25422 TGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCG 25481
Query 7592 GACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTG 7630
||||| | ||| | || || || || | ||| |||||
Sbjct 25482 GACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520
>seq59797
Length=1646
Score = 86.0 bits (94), Expect = 7e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| |||| |||| |||| | |||||||| || || ||||| ||||||||||||||
Sbjct 1507 TCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCTGGTTCA 1566
Query 94855 TTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913
|| ||| | |||| |||||||||||| ||||| | ||||| ||| | ||||| ||
Sbjct 1567 TT-TGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATTCTCTAA 1625
Query 94914 CGAGCTTATCTCTCGTGACGA 94934
|| | || || ||||||||
Sbjct 1626 TGAATTAATTTCACGTGACGA 1646
>seq3737
Length=58963
Score = 86.0 bits (94), Expect = 7e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757
|| || || ||||| || |||||||||| |||||| || || | |||||| | ||
Sbjct 32966 CCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATGGCA 32907
Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817
|| | ||| || || || | | ||||| || ||||||||||||| ||| | | | |
Sbjct 32906 AACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAGCCA 32847
Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877
||| | ||||| || || || | ||| || ||| ||||| ||| || | || ||
Sbjct 32846 GAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTTTTG 32787
Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|| || || || || | || | ||||||| ||||||||||| ||
Sbjct 32786 CCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582628909830800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |