Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13731 122 1e-22 seq7596 105 8e-18 seq59797 86.0 7e-12 seq3737 86.0 7e-12 >seq13731 Length=15303 Score = 122 bits (134), Expect = 1e-22 Identities = 448/693 (65%), Gaps = 23/693 (3%) Strand=Plus/Minus Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 104974 ||||| |||||||| || ||| | ||||| || |||||||| ||| |||||||| | Sbjct 1626 GAGACCGGTACACCTTATATGTTGTACAAGGATGCCTGTAATAGAAAAAGTAATCAGCAA 1567 Query 104975 AATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAA 105034 ||| | || || || | |||||| || || ||||| | |||| | | | Sbjct 1566 AATATTGGCACCATTAAATGCAGCAATCTATGCACTGAAATTGTCGAATATTCTGCACCT 1507 Query 105035 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 105094 |||||| |||||| || ||| | |||||||||||| | || || ||| || || Sbjct 1506 GATGAGGTGGCTGTATGCAACTTAGCATCAATCGCTTTGAACATGTTTGTCACACCTGA- 1448 Query 105095 ACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTA 105154 ||| || | |||| || ||| | ||||| || |||||||| || ||| | Sbjct 1447 --AAAAACTTACGATTTCCAACGGCTCAAGGAAGTCACCAAAACTGTGACACGAAATTTG 1390 Query 105155 AACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGA 105212 || | | | ||||| | |||| || ||| ||| || || ||||| || | | Sbjct 1389 AATAAAATCATTGAAATAAATCACTA-CCCATTGCCCGA-GGCAAAAAAATCAAACTTTA 1332 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272 ||||||||||||| || |||| || || ||| | || || | | || ||| ||| Sbjct 1331 GACACCGTCCAATCGGGATCGGCGTACAAGGTTTTGCAGACGCTCTTATACTTATGCGCT 1272 Query 105273 ACGCATTTGATTCCGACGAAG----CGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 | | | || ||| ||| | ||||||| | | || || ||||| Sbjct 1271 ATCCGTACGAAAGCGAACAAGCATTCCTTTTAAATCAA----CAGGTTTTCGAAACCATT 1216 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 ||| | | || | || || |||| || ||||| ||| | ||| | |||||||| Sbjct 1215 TATTATGGTGCATTAGAAGCTAGTTGTGAATTGGCTGAGAAATACGGTACCTATGAAACT 1156 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 105447 | ||| || | ||||| || |||||| | || |||| ||| |||||||| || | Sbjct 1155 TATGAAGGCTGTCCAG-TTAGCAAGGGAATTCTACAATATGACATGTGGGATAAGAAGCC 1097 Query 105448 CA---AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 || |||| || ||||| || | ||||| || || || | ||| || | Sbjct 1096 CACTGAGCT---CTGGAACTGGACAGAATTGAAGGAGAAAATTAAACAGCATGGTGTTAG 1040 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 || ||||| | || || ||||| || || || || || |||||| |||| ||||| Sbjct 1039 GAATTCCCTCCTGCTTGCACCTATGCCCACCGCTTCAACTGCGCAAATCATGGGCAATAA 980 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTA 105597 ||| | || ||||||||||| | |||||||| Sbjct 979 TGAGTCATTCGAACCCTACACTTCTAACATCTA 947 >seq7596 Length=30452 Score = 105 bits (116), Expect = 8e-18 Identities = 267/399 (67%), Gaps = 9/399 (2%) Strand=Plus/Plus Query 7238 TACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAACGAGGAG 7297 || |||||| ||||| ||| | ||||| ||||| | || | || || ||| Sbjct 25125 TATCAAGCCAGCACTTCTGAGCTTTTTGGGAAAGTACAGGAGATCCCCCAGCGAGAGACC 25184 Query 7298 ACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCGTC 7357 || || |||||||| || || ||||||||| |||||| || | ||| | ||| Sbjct 25185 ACTCCATTCTACCCTCGATCCCCGTACGGAGTCGCAAAGGCGTACGCCTACTGGATTGTC 25244 Query 7358 AAAAATTACCGCGAGTCTTAC---GGACTGTTTGC-GTGCTCCGGAATCCTCTTCAACCA 7413 |||||||||||||| ||| | |||||||| ||| |||||||| |||||||| Sbjct 25245 GTCAATTACCGCGAGTCATACCCAAGTCTGTTTGCTGTG-AATGGAATCCTATTCAACCA 25303 Query 7414 TGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTA-CCGAGG-GTATCAAA 7471 ||||||||| | |||| | | ||||| || | || || | |||||| || | | Sbjct 25304 TGAATCACCTCGTAGAGGCGAAACTTTTGTGACCAGAAAAATCACCCGAGGTGTGGCGA- 25362 Query 7472 CAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGAT 7531 | ||| || || |||| ||||| || |||| ||| | || || |||| Sbjct 25363 -AGATCTACCTTGGAGAGCAGGAATTCATCGAGCTGGGCAACCTCGACTCGAAACGAGAC 25421 Query 7532 TGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC 7591 ||||| || || ||||| |||||||| |||||| | ||| | || ||||| | | Sbjct 25422 TGGGGCCATGCTCGTGACTACGTTGAAGCCATGTGGATTATGATGCAGCAAGAACACCCG 25481 Query 7592 GACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTG 7630 ||||| | ||| | || || || || | ||| ||||| Sbjct 25482 GACGACTTTGTCATTGCCACTGGAGAAGCGCATTCAGTG 25520 >seq59797 Length=1646 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || |||| |||| |||| | |||||||| || || ||||| |||||||||||||| Sbjct 1507 TCATTTGGTGAGAGACTAGTAGCATTTGCTGCCGTAGAAGGTATTTTCTTCTCTGGTTCA 1566 Query 94855 TTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || ||| | |||| |||||||||||| ||||| | ||||| ||| | ||||| || Sbjct 1567 TT-TGCATCCATTTTCTGGCTCAAGAAGAGAGGTTTGATGCCTGGTTTGACATTCTCTAA 1625 Query 94914 CGAGCTTATCTCTCGTGACGA 94934 || | || || |||||||| Sbjct 1626 TGAATTAATTTCACGTGACGA 1646 >seq3737 Length=58963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || || || ||||| || |||||||||| |||||| || || | |||||| | || Sbjct 32966 CCGACCGCGTCAATTTCGTCAATGAAGAGGATGCACGGGGCGTTCTTGCGAGCCATGGCA 32907 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || | ||| || || || | | ||||| || ||||||||||||| ||| | | | | Sbjct 32906 AACATATCACGAACTCGACTAGGACCCACGCCCACAAACATCTCCAAAAACTCCGAGCCA 32847 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 ||| | ||||| || || || | ||| || ||| ||||| ||| || | || || Sbjct 32846 GAAACTGAAATGAAAGGCACTTTTGCTTCGCCAGCAGTGGCTTTGGCTAGTAACGTTTTG 32787 Query 9878 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || || || || | || | ||||||| ||||||||||| || Sbjct 32786 CCGGTTCCAGGTGGGCCAGTCAGCAAGGCACCTTTGGGAATCTTGGCACC 32737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582628909830800