Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq32170 286 4e-72
seq53698 143 3e-29
seq40302 86.0 7e-12
>seq32170
Length=3971
Score = 286 bits (316), Expect = 4e-72
Identities = 336/452 (74%), Gaps = 2/452 (0%)
Strand=Plus/Minus
Query 79277 CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACT 79336
||||| || ||||| ||| | || ||||| || || || ||||||| |||||||
Sbjct 3917 CGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTGCAGGCCGGGGCACT 3858
Query 79337 CGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396
|||||||||||||||| |||| | ||||| || || || ||| ||||||||||
Sbjct 3857 CGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAAGAGGTCCG 3798
Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456
| | ||||| ||| ||||||||||||| ||| | |||||| ||| |||| |
Sbjct 3797 GCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGTGTTCTTGC 3738
Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516
|||| |||||||| || | |||||||||||||||||| || || |||||||| |||| |
Sbjct 3737 GCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGCAAACGCCC 3678
Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576
|| ||||||| |||||||||| ||||| ||||| ||||||||| | || || ||||
Sbjct 3677 CCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACGCGCAGCA 3618
Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636
| ||||| | || | | ||||||||| || ||| |||| || || || || |
Sbjct 3617 TCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCCGCGGCGCGGA 3558
Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695
|| | ||| || || || ||||| |||| | ||||||||||| ||||||| |||
Sbjct 3557 TG-CAGTGCACGTTGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCACTGCTTC 3499
Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTC 79727
||||| |||||||||||||| |||||||| ||
Sbjct 3498 AGCGTGTCGTAGATGCCCTCAATCGAGTCCTC 3467
Score = 219 bits (242), Expect = 5e-52
Identities = 312/434 (72%), Gaps = 4/434 (1%)
Strand=Plus/Plus
Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345
||||||||||||||||| ||||| ||| ||||||| ||||||||||| | |||| ||
Sbjct 3476 ATTGAGGGCATCTACGACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGC 3535
Query 19346 ATCGGGATCCAC-TGCTCGAATATCCG-GTCGAGTGGTACACGAATCAATGGGACGAACG 19403
|| || || || ||| | ||||| | || | || || |||| || || ||||
Sbjct 3536 ATTGGCGTCAACGTGCACTGC-ATCCGCGCCGCG-GGCACCTACATCAGCGGCACAAACG 3593
Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463
| || | | || | || || ||||| ||||||| ||||||||| ||| | |||||
Sbjct 3594 GCGTCAGCAATGGGCTGGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGG 3653
Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523
||||||| || ||| ||| ||| |||| |||||||||||||| || |||||||| |
Sbjct 3654 ACCAGGGCGGGAACAAGCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCG 3713
Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583
|| || | || || ||||| |||||| |||| || |||||| | || ||||
Sbjct 3714 ACATCTTCGAGTTTCTCGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCG 3773
Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643
|||||||| ||| ||||| | |||||||| || ||| || || || ||||| |
Sbjct 3774 ACCTCTTCTACGCCATGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCG 3833
Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703
||| ||||||||||||||||| ||||| ||||| | ||| || |||||||| |
Sbjct 3834 TCTGGTCGCTGATGTGCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCT 3893
Query 19704 TCAATGAGTTGTAC 19717
| | ||| |||||
Sbjct 3894 TTGAGGAGCTGTAC 3907
>seq53698
Length=1888
Score = 143 bits (158), Expect = 3e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20603 GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGC 20662
|| || ||| || || |||||| | | |||| |||||| ||||| || || ||||||
Sbjct 1543 GAGATTCCCGAGGACATCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCG 1484
Query 20663 ATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTC 20722
|| | || ||||| ||||| ||||| |||| |||||||||||| ||||||||||| ||
Sbjct 1483 ATTCTGGAGATGGCCGCCGACCGCGGGGCCTTCATCGACCAGTCGCAGTCGCTCAACGTG 1424
Query 20723 TTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAG 20782
||| | | |||| | |||||||| | | ||| ||||| | | |||||| | |
Sbjct 1423 CACATTGCCGAGCCGACCATGGCGAAGATCACCTCGATGCACTTCTTTGGCTGGAAACTG 1364
Query 20783 GGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814
|| || ||||||||||||||||| ||||| ||
Sbjct 1363 GGCCTGAAGACGGGCATGTACTACCTGCGCAC 1332
Score = 125 bits (138), Expect = 8e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|| |||| ||||||||||||||||| || ||| ||||| || | | ||||||
Sbjct 1332 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCAGTTTCCAGCCAAAGAAGTGCATCGAG 1391
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | ||| |||| |||| | | ||| | |||||||||||| ||||||||||||
Sbjct 1392 GTGATCTTCGCCATGGTCGGCTCGGCAATGTGCACGTTGAGCGACTGCGACTGGTCGATG 1451
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
| || ||||||||||| ||||| || | | || ||| |||||||||||||||| ||||
Sbjct 1452 AAGGCCCCGCGGTCGGCGGCCATCTCCAGAATCGCCTTCTGCGGAATCTCCCAGACGGTC 1511
Query 78370 CGGTAAATGGCCTT 78383
||| | ||||||
Sbjct 1512 TTGTAGAGGGCCTT 1525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425
||||| | |||||| |||| | ||||| ||||| ||||||||||| || |||||
Sbjct 1856 CACGGCGTGCGCAACAGTCTGCTGCTGGCGCCGATGCCCACCGCCTCGACGGCGCAGATT 1797
Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTG 20485
| || ||||| ||| | | ||||||||||||| |||||||||| ||| || ||
Sbjct 1796 CTCGGCAACAATGAGTCCATTGAGCCGTACACGAATAACATCTACTCGCGACGGGTGCTC 1737
Query 20486 GCCGGTGAGTT 20496
|||| |||||
Sbjct 1736 TCCGGCGAGTT 1726
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567
|||||||||| || ||| ||| ||||||||| ||||||||||||| | | |||
Sbjct 1726 AACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATGGACTCA 1785
Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGA 78621
||||| || | ||||| || ||||||||||| ||||| || || | ||| |||
Sbjct 1786 TTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839
>seq40302
Length=2817
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032
||||| | || ||| | || || || |||||| || ||||||||| ||||| ||
Sbjct 2392 TTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTT- 2334
Query 60033 TGT--GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090
|| || || || ||||| || ||||| ||||| ||||||||||||| ||| ||| |
Sbjct 2333 TGCCAGC-ATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCAGCAATG 2275
Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118
||||||| ||| ||||||||||| ||
Sbjct 2274 AGCTGATCAGCCGCGACGAGGGCCTGCA 2247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547930541944800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |