Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq32170 286 4e-72 seq53698 143 3e-29 seq40302 86.0 7e-12 >seq32170 Length=3971 Score = 286 bits (316), Expect = 4e-72 Identities = 336/452 (74%), Gaps = 2/452 (0%) Strand=Plus/Minus Query 79277 CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACT 79336 ||||| || ||||| ||| | || ||||| || || || ||||||| ||||||| Sbjct 3917 CGTACTTCTCGTACAGCTCCTCAAAGGCCTCGCCCCAGCAGTCCTGCAGGCCGGGGCACT 3858 Query 79337 CGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 |||||||||||||||| |||| | ||||| || || || ||| |||||||||| Sbjct 3857 CGTGCGGGCACATCAGCGACCAGACGCCGTCCGCCTGGACGCGCTTCATAAAGAGGTCCG 3798 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 | | ||||| ||| ||||||||||||| ||| | |||||| ||| |||| | Sbjct 3797 GCACCCACATGGCGTAGAAGAGGTCGCGGGCACGGAGCTCCTCCGAGCCGGTGTTCTTGC 3738 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 |||| |||||||| || | |||||||||||||||||| || || |||||||| |||| | Sbjct 3737 GCAGGTCGAGAAACTCGAAGATGTCGGCGTGCCACGGTTCGAGGTAGATGGCAAACGCCC 3678 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 || ||||||| |||||||||| ||||| ||||| ||||||||| | || || |||| Sbjct 3677 CCGGGCGCTTGTTCCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACGCGCAGCA 3618 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | ||||| | || | | ||||||||| || ||| |||| || || || || | Sbjct 3617 TCGGCACCAGCCCATTGCTGACGCCGTTTGTGCCGCTGATGTAGGTGCCCGCGGCGCGGA 3558 Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 || | ||| || || || ||||| |||| | ||||||||||| ||||||| ||| Sbjct 3557 TG-CAGTGCACGTTGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCACTGCTTC 3499 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTC 79727 ||||| |||||||||||||| |||||||| || Sbjct 3498 AGCGTGTCGTAGATGCCCTCAATCGAGTCCTC 3467 Score = 219 bits (242), Expect = 5e-52 Identities = 312/434 (72%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||||||||||||||| ||||| ||| ||||||| ||||||||||| | |||| || Sbjct 3476 ATTGAGGGCATCTACGACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGC 3535 Query 19346 ATCGGGATCCAC-TGCTCGAATATCCG-GTCGAGTGGTACACGAATCAATGGGACGAACG 19403 || || || || ||| | ||||| | || | || || |||| || || |||| Sbjct 3536 ATTGGCGTCAACGTGCACTGC-ATCCGCGCCGCG-GGCACCTACATCAGCGGCACAAACG 3593 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | || | | || | || || ||||| ||||||| ||||||||| ||| | ||||| Sbjct 3594 GCGTCAGCAATGGGCTGGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGG 3653 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| || ||| ||| ||| |||| |||||||||||||| || |||||||| | Sbjct 3654 ACCAGGGCGGGAACAAGCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCG 3713 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 || || | || || ||||| |||||| |||| || |||||| | || |||| Sbjct 3714 ACATCTTCGAGTTTCTCGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCG 3773 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||||||| ||| ||||| | |||||||| || ||| || || || ||||| | Sbjct 3774 ACCTCTTCTACGCCATGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCG 3833 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 ||| ||||||||||||||||| ||||| ||||| | ||| || |||||||| | Sbjct 3834 TCTGGTCGCTGATGTGCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCT 3893 Query 19704 TCAATGAGTTGTAC 19717 | | ||| ||||| Sbjct 3894 TTGAGGAGCTGTAC 3907 >seq53698 Length=1888 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20603 GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGC 20662 || || ||| || || |||||| | | |||| |||||| ||||| || || |||||| Sbjct 1543 GAGATTCCCGAGGACATCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCG 1484 Query 20663 ATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTC 20722 || | || ||||| ||||| ||||| |||| |||||||||||| ||||||||||| || Sbjct 1483 ATTCTGGAGATGGCCGCCGACCGCGGGGCCTTCATCGACCAGTCGCAGTCGCTCAACGTG 1424 Query 20723 TTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAG 20782 ||| | | |||| | |||||||| | | ||| ||||| | | |||||| | | Sbjct 1423 CACATTGCCGAGCCGACCATGGCGAAGATCACCTCGATGCACTTCTTTGGCTGGAAACTG 1364 Query 20783 GGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 || || ||||||||||||||||| ||||| || Sbjct 1363 GGCCTGAAGACGGGCATGTACTACCTGCGCAC 1332 Score = 125 bits (138), Expect = 8e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||||||||| || ||| ||||| || | | |||||| Sbjct 1332 GTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCAGTTTCCAGCCAAAGAAGTGCATCGAG 1391 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | ||| |||| |||| | | ||| | |||||||||||| |||||||||||| Sbjct 1392 GTGATCTTCGCCATGGTCGGCTCGGCAATGTGCACGTTGAGCGACTGCGACTGGTCGATG 1451 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | || ||||||||||| ||||| || | | || ||| |||||||||||||||| |||| Sbjct 1452 AAGGCCCCGCGGTCGGCGGCCATCTCCAGAATCGCCTTCTGCGGAATCTCCCAGACGGTC 1511 Query 78370 CGGTAAATGGCCTT 78383 ||| | |||||| Sbjct 1512 TTGTAGAGGGCCTT 1525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 20366 CACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATC 20425 ||||| | |||||| |||| | ||||| ||||| ||||||||||| || ||||| Sbjct 1856 CACGGCGTGCGCAACAGTCTGCTGCTGGCGCCGATGCCCACCGCCTCGACGGCGCAGATT 1797 Query 20426 ATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTG 20485 | || ||||| ||| | | ||||||||||||| |||||||||| ||| || || Sbjct 1796 CTCGGCAACAATGAGTCCATTGAGCCGTACACGAATAACATCTACTCGCGACGGGTGCTC 1737 Query 20486 GCCGGTGAGTT 20496 |||| ||||| Sbjct 1736 TCCGGCGAGTT 1726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 |||||||||| || ||| ||| ||||||||| ||||||||||||| | | ||| Sbjct 1726 AACTCGCCGGAGAGCACCCGTCGCGAGTAGATGTTATTCGTGTACGGCTCAATGGACTCA 1785 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGA 78621 ||||| || | ||||| || ||||||||||| ||||| || || | ||| ||| Sbjct 1786 TTGTTGCCGAGAATCTGCGCCGTCGAGGCGGTGGGCATCGGCGCCAGCAGCAGA 1839 >seq40302 Length=2817 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | || ||| | || || || |||||| || ||||||||| ||||| || Sbjct 2392 TTTGCCGAGCGCCTCGTCGCCTTCGCCGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTT- 2334 Query 60033 TGT--GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || || || || ||||| || ||||| ||||| ||||||||||||| ||| ||| | Sbjct 2333 TGCCAGC-ATCTTTTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCAGCAATG 2275 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||| ||| ||||||||||| || Sbjct 2274 AGCTGATCAGCCGCGACGAGGGCCTGCA 2247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547930541944800