Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq32170 255 6e-63 seq4881 120 3e-22 seq53698 95.1 1e-14 seq40302 91.5 2e-13 >seq32170 Length=3971 Score = 255 bits (282), Expect = 6e-63 Identities = 353/489 (72%), Gaps = 4/489 (1%) Strand=Plus/Plus Query 53318 CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTAC 53377 || ||| |||| |||||| ||| || || | || |||||||| || ||||||||| Sbjct 3431 CCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTAC 3490 Query 53378 GAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TG 53436 || ||||| ||| |||| ||| ||||||||||| | | || || || || || || || Sbjct 3491 GACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTG 3550 Query 53437 CTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAAT 53496 | | | |||| || ||||| |||| || || ||||||||| | |||| | Sbjct 3551 CACTG-CATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCT 3609 Query 53497 CGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAA 53556 ||||| ||||| ||||||| ||||||||| ||||| ||||| ||||||| || || Sbjct 3610 GGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAA 3669 Query 53557 GCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616 |||| |||| |||| |||||||||||||| ||||||||||||||||| | |||||||| Sbjct 3670 GCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCT 3729 Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTC 53675 ||| ||||| ||| || || ||| | || ||| ||||| || ||| || Sbjct 3730 CGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCGACCTCTTCTAC-GCCA 3788 Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735 ||||| | ||||||||||| ||| | || || ||||| | |||| ||||||| Sbjct 3789 TGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCGTCTGGTCGCTGATGT 3848 Query 53736 GCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATC 53795 ||||| |||||||||||||||| |||| || || |||| ||| | ||| |||| Sbjct 3849 GCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCTTTGAGGAGCTGTACG 3908 Query 53796 GGACGTACG 53804 || ||||| Sbjct 3909 AGAAGTACG 3917 >seq4881 Length=46776 Score = 120 bits (132), Expect = 3e-22 Identities = 249/369 (67%), Gaps = 9/369 (2%) Strand=Plus/Minus Query 152760 GTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCAT 152819 ||||| | ||||| | || ||||| |||||||| ||||| | ||| || ||||| Sbjct 36378 GTGGATAAAGTTGATTAGCAGCCCCTTAATGTGCGAGCCGTCCTGGTCCTGATCAGTCAT 36319 Query 152820 GATCATCAGACGACCGTAGCGCAGG----TCACGTAGTG-ACCC----GTAGACCTTTCC 152870 |||||||| |||||||||||| | | || | || | ||| |||| Sbjct 36318 AATCATCAGCTTGCCGTAGCGCAGGCTCTTGAGGTCCTCCACGCTCTGGTACGTCTTTTT 36259 Query 152871 ATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTT 152930 | || || |||| || || | | |||| | ||| |||| ||| | | ||| || Sbjct 36258 GTACTGCAGACCGACAATTTTGATAATGTTGTTGATTTCGGCATTCTCGATAATCTGCTT 36199 Query 152931 CACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTT 152990 || ||| || ||||| ||| || || || || || ||||| ||||| || || Sbjct 36198 GTGCGAGGCCTCGCGAACGTTGAGCATTTTGCCGCGCAGCGGAAAGACGCCATACTTGTC 36139 Query 152991 GCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGAT 153050 |||||| || |||| ||| ||||| | | || | || |||||||| |||||||||| Sbjct 36138 GCGGCCGACGACGCCCAGGCCGGCCACCACCAGCGACTTGGCCGAGTCGCCCTCGGTGAG 36079 Query 153051 AATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGG 153110 ||| |||||||||||| || | || ||||| |||||||| || |||||||| Sbjct 36078 AATCAGCGTACAGTCGATCGAGTTTTTGGTGCCGGCGTCATTGGCGTCCTCCAGCTTGGG 36019 Query 153111 GATTCCCGT 153119 || ||||| Sbjct 36018 AATGCCCGT 36010 Score = 109 bits (120), Expect = 6e-19 Identities = 207/300 (69%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||| | ||| || || |||||||| || || || || || || || Sbjct 37185 GTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGG 37126 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| || ||||| | ||||||| ||| ||||||| || |||| ||||| Sbjct 37125 CCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATG 37066 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| |||| || ||||| || || | ||||| |||| ||| Sbjct 37065 ATGGTCGACAT--GAGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGC 37008 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | |||||||| |||||||| | || | | ||| ||||| ||||| | | | || Sbjct 37007 CGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTCGTTGCGCTTGAAGCAGGTAAAGAGCA 36948 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCGAACGCTTGATGTCC 117601 |||||||||| | ||||| || || ||| ||| | || || || || |||| ||||| Sbjct 36947 CCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCA-GCGACGGAATGGAGCGCTCATTGTCC 36889 Score = 104 bits (114), Expect = 3e-17 Identities = 209/301 (69%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| |||||| || |||||||| || ||| || || |||||||| Sbjct 37185 GTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGG 37126 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| | ||||||| ||| || || | ||| |||| || | Sbjct 37125 CCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATG 37066 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | | || || | || |||||||| || || | ||||| | | | || Sbjct 37065 ATGGTCGACATG-AGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGCC 37007 Query 152208 CGCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 |||| |||||||||||| | || || | ||| ||| ||||| |||| | | | Sbjct 37006 GGCCAGCTGCGCCACCTTGACCTCGCGCTTGTC--GTTGCGCTTGAAGCAGGTAAAGAGC 36949 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGCTTGATGTC 152324 |||||||||||| || || | |||||||||| | || ||||| || |||| |||| Sbjct 36948 ACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCA-GCGACGGAATGGAGCGCTCATTGTC 36890 Query 152325 C 152325 | Sbjct 36889 C 36889 >seq53698 Length=1888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG---AGTCTGATTGACATGA 55784 |||||| | ||| ||| || ||||||||||| |||||| | |||| || ||| Sbjct 1527 TCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCGATTCTG---GAGATGG 1471 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 || || || || || | |||||||||||| ||||| || ||| | ||| | | | Sbjct 1470 CCGCCGACCGCGGGGCCTTCATCGACCAGTCGCAGTCGCTCAACGTGCACATTGCCGAGC 1411 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | |||| ||| | | |||||||||||| | || ||||| ||| || ||||||| Sbjct 1410 CGACCATGGCGAAGATCACCTCGATGCACTTCTTTGGCTGGAAACTGGGCCTGAAGACGG 1351 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||| ||||| || Sbjct 1350 GCATGTACTACCTGCGCAC 1332 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||| ||||| ||||||| ||||| ||||| |||||||| ||||| | Sbjct 1853 GGCGTGCGCAACAGTCTGCTGCTGGCGCCGATGCCCACCGCCTCGACGGCGCAGATTCTC 1794 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||| ||| | | ||||||||||||| ||||||||| ||| ||| || | Sbjct 1793 GGCAACAATGAGTCCATTGAGCCGTACACGAATAACATCTACTCGCGACGGGTGCTCTCC 1734 Query 55598 GGTGAGTTT 55606 || |||||| Sbjct 1733 GGCGAGTTT 1725 >seq40302 Length=2817 Score = 91.5 bits (100), Expect = 2e-13 Identities = 383/590 (65%), Gaps = 31/590 (5%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| || || | ||| |||| ||||| || | ||||| Sbjct 2234 GGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCC 2293 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATG---GCACAGAAGGAACCACTGAAGAA 74866 ||||| || || |||||||||| |||||||||| ||| ||||| || |||||||| Sbjct 2294 CGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCA---AAGGAGCCGCTGAAGAA 2350 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC------ATCGGA 74920 |||||| || || || |||||||| ||||| | || || | || |||| Sbjct 2351 GATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGC 2410 Query 74921 AGTCATCCAAGTCTGAGCCCA-TTCAGCTT-TTCGTTTGACCGCAGGG-ACAGTATCGAT 74977 | | |||| | | ||||| ||| ||| |||| || ||||||| | || | ||| Sbjct 2411 GGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCG--CGA-CGCAGGGCATCGTCTGGAT 2467 Query 74978 CGCTTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035 || | ||||||| || || || || | || ||| | ||| |||| || Sbjct 2468 GGCGTTGAAGAGGTACTCGC--GCTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGG 2525 Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095 |||||| ||||||| || | |||| || |||| | ||||||| | || ||| Sbjct 2526 GAGTACATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCC 2585 Query 75096 TCTGCAATCTGT-ACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCG 75152 || | | | || || | | |||| || ||| ||||| ||||||||||| Sbjct 2586 TCGGTGA-CGGTCACCTCGCGGATGAAGCGCTC--CGCGAGGTTCTCATTGACGATGCCG 2642 Query 75153 TCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT 75212 || ||||||||| || ||||| || ||||||||||||||| | | | || Sbjct 2643 TCGCTGGCGGCGAAGAAGGCCAGAACGTGGGAGATAAAGTGGCGCTCGTTTCGATTTAGC 2702 Query 75213 T---TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTC 75269 | || ||| | ||||| | || || | ||||||||| |||||||| ||| Sbjct 2703 TCGCCGTTCCAGTGGGCGAGGTCGCGACTCAGGTCCACCTCCTCGACGGTCCAGAAGCTC 2762 Query 75270 CCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 | ||||| ||||||| | ||| | ||| | ||| | ||| || || Sbjct 2763 GCCTCGGCCTTCTTGTACATCGTCCAGATGTCGGCGTACTCGATGGGGAA 2812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546623159866000