Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq32170 255 6e-63
seq4881 120 3e-22
seq53698 95.1 1e-14
seq40302 91.5 2e-13
>seq32170
Length=3971
Score = 255 bits (282), Expect = 6e-63
Identities = 353/489 (72%), Gaps = 4/489 (1%)
Strand=Plus/Plus
Query 53318 CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTAC 53377
|| ||| |||| |||||| ||| || || | || |||||||| || |||||||||
Sbjct 3431 CCGCAGCTGTCCTCCTGCTTTCTGCTGACGCTCTCCGAGGACTCGATTGAGGGCATCTAC 3490
Query 53378 GAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TG 53436
|| ||||| ||| |||| ||| ||||||||||| | | || || || || || || ||
Sbjct 3491 GACACGCTGAAGCAGTGCGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCAACGTG 3550
Query 53437 CTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAAT 53496
| | | |||| || ||||| |||| || || ||||||||| | |||| |
Sbjct 3551 CACTG-CATCCGCGCCGCGGGCACCTACATCAGCGGCACAAACGGCGTCAGCAATGGGCT 3609
Query 53497 CGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAA 53556
||||| ||||| ||||||| ||||||||| ||||| ||||| ||||||| || ||
Sbjct 3610 GGTGCCGATGCTGCGCGTCTACAACAACACCGCCCGCTACGTGGACCAGGGCGGGAACAA 3669
Query 53557 GCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCT 53616
|||| |||| |||| |||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 3670 GCGCCCGGGGGCGTTTGCCATCTACCTCGAACCGTGGCACGCCGACATCTTCGAGTTTCT 3729
Query 53617 CGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTC 53675
||| ||||| ||| || || ||| | || ||| ||||| || ||| ||
Sbjct 3730 CGACCTGCGCAAGAACACCGGCTCGGAGGAGCTCCGTGCCCGCGACCTCTTCTAC-GCCA 3788
Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735
||||| | ||||||||||| ||| | || || ||||| | |||| |||||||
Sbjct 3789 TGTGGGTGCCGGACCTCTTTATGAAGCGCGTCCAGGCGGACGGCGTCTGGTCGCTGATGT 3848
Query 53736 GCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATC 53795
||||| |||||||||||||||| |||| || || |||| ||| | ||| ||||
Sbjct 3849 GCCCGCACGAGTGCCCCGGCCTGCAGGACTGCTGGGGCGAGGCCTTTGAGGAGCTGTACG 3908
Query 53796 GGACGTACG 53804
|| |||||
Sbjct 3909 AGAAGTACG 3917
>seq4881
Length=46776
Score = 120 bits (132), Expect = 3e-22
Identities = 249/369 (67%), Gaps = 9/369 (2%)
Strand=Plus/Minus
Query 152760 GTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCAT 152819
||||| | ||||| | || ||||| |||||||| ||||| | ||| || |||||
Sbjct 36378 GTGGATAAAGTTGATTAGCAGCCCCTTAATGTGCGAGCCGTCCTGGTCCTGATCAGTCAT 36319
Query 152820 GATCATCAGACGACCGTAGCGCAGG----TCACGTAGTG-ACCC----GTAGACCTTTCC 152870
|||||||| |||||||||||| | | || | || | ||| ||||
Sbjct 36318 AATCATCAGCTTGCCGTAGCGCAGGCTCTTGAGGTCCTCCACGCTCTGGTACGTCTTTTT 36259
Query 152871 ATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTT 152930
| || || |||| || || | | |||| | ||| |||| ||| | | ||| ||
Sbjct 36258 GTACTGCAGACCGACAATTTTGATAATGTTGTTGATTTCGGCATTCTCGATAATCTGCTT 36199
Query 152931 CACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTT 152990
|| ||| || ||||| ||| || || || || || ||||| ||||| || ||
Sbjct 36198 GTGCGAGGCCTCGCGAACGTTGAGCATTTTGCCGCGCAGCGGAAAGACGCCATACTTGTC 36139
Query 152991 GCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGAT 153050
|||||| || |||| ||| ||||| | | || | || |||||||| ||||||||||
Sbjct 36138 GCGGCCGACGACGCCCAGGCCGGCCACCACCAGCGACTTGGCCGAGTCGCCCTCGGTGAG 36079
Query 153051 AATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGG 153110
||| |||||||||||| || | || ||||| |||||||| || ||||||||
Sbjct 36078 AATCAGCGTACAGTCGATCGAGTTTTTGGTGCCGGCGTCATTGGCGTCCTCCAGCTTGGG 36019
Query 153111 GATTCCCGT 153119
|| |||||
Sbjct 36018 AATGCCCGT 36010
Score = 109 bits (120), Expect = 6e-19
Identities = 207/300 (69%), Gaps = 6/300 (2%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| || |||||||| | ||| || || |||||||| || || || || || || ||
Sbjct 37185 GTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGG 37126
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | ||| || ||||| | ||||||| ||| ||||||| || |||| |||||
Sbjct 37125 CCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATG 37066
Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
|| || || | ||| |||| || ||||| || || | ||||| |||| |||
Sbjct 37065 ATGGTCGACAT--GAGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGC 37008
Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542
| |||||||| |||||||| | || | | ||| ||||| ||||| | | | ||
Sbjct 37007 CGGCCAGCTGCGCCACCTTGACCTCGCGCTTGTCGTTGCGCTTGAAGCAGGTAAAGAGCA 36948
Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCGAACGCTTGATGTCC 117601
|||||||||| | ||||| || || ||| ||| | || || || || |||| |||||
Sbjct 36947 CCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCA-GCGACGGAATGGAGCGCTCATTGTCC 36889
Score = 104 bits (114), Expect = 3e-17
Identities = 209/301 (69%), Gaps = 8/301 (3%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| |||||||| |||| |||||| || |||||||| || ||| || || ||||||||
Sbjct 37185 GTAAAGATGTAACGGGCGCTGGCGGCGTCCTTGCCGCCCTGCAGGCGGGTGCCAAACTGG 37126
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || ||||| | ||||||| ||| || || | ||| |||| || |
Sbjct 37125 CCAATGGGCATCAGCAGGTTAATGTTGTTGCTGCCGACAAAGTCCTGCGCCAGGTTGATG 37066
Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207
|| || | | || || | || |||||||| || || | ||||| | | | ||
Sbjct 37065 ATGGTCGACATG-AGCGAGACCTCGCCGTGGTGGTAGGCGCTGTGCTCGCCCACCGAGCC 37007
Query 152208 CGCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|||| |||||||||||| | || || | ||| ||| ||||| |||| | | |
Sbjct 37006 GGCCAGCTGCGCCACCTTGACCTCGCGCTTGTC--GTTGCGCTTGAAGCAGGTAAAGAGC 36949
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGCTTGATGTC 152324
|||||||||||| || || | |||||||||| | || ||||| || |||| ||||
Sbjct 36948 ACCTTGCGCTGGCCCGGCTTGAGCCCGTCCACCA-GCGACGGAATGGAGCGCTCATTGTC 36890
Query 152325 C 152325
|
Sbjct 36889 C 36889
>seq53698
Length=1888
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/199 (71%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG---AGTCTGATTGACATGA 55784
|||||| | ||| ||| || ||||||||||| |||||| | |||| || |||
Sbjct 1527 TCAAGGCCCTCTACAAGACCGTCTGGGAGATTCCGCAGAAGGCGATTCTG---GAGATGG 1471
Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844
|| || || || || | |||||||||||| ||||| || ||| | ||| | | |
Sbjct 1470 CCGCCGACCGCGGGGCCTTCATCGACCAGTCGCAGTCGCTCAACGTGCACATTGCCGAGC 1411
Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904
| | |||| ||| | | |||||||||||| | || ||||| ||| || |||||||
Sbjct 1410 CGACCATGGCGAAGATCACCTCGATGCACTTCTTTGGCTGGAAACTGGGCCTGAAGACGG 1351
Query 55905 GTATGTACTATCTGCGGAC 55923
| |||||||| ||||| ||
Sbjct 1350 GCATGTACTACCTGCGCAC 1332
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| | |||||| ||||| ||||||| ||||| ||||| |||||||| ||||| |
Sbjct 1853 GGCGTGCGCAACAGTCTGCTGCTGGCGCCGATGCCCACCGCCTCGACGGCGCAGATTCTC 1794
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597
|||||||| ||| | | ||||||||||||| ||||||||| ||| ||| || |
Sbjct 1793 GGCAACAATGAGTCCATTGAGCCGTACACGAATAACATCTACTCGCGACGGGTGCTCTCC 1734
Query 55598 GGTGAGTTT 55606
|| ||||||
Sbjct 1733 GGCGAGTTT 1725
>seq40302
Length=2817
Score = 91.5 bits (100), Expect = 2e-13
Identities = 383/590 (65%), Gaps = 31/590 (5%)
Strand=Plus/Plus
Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
|||||| || ||| ||| || || | ||| |||| ||||| || | |||||
Sbjct 2234 GGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATCAGCTCATTGCTGAAGGTCAGGCC 2293
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATG---GCACAGAAGGAACCACTGAAGAA 74866
||||| || || |||||||||| |||||||||| ||| ||||| || ||||||||
Sbjct 2294 CGGCATCAGGCCGCGCTTCTTCAGCCAAAAGATGCTGGCA---AAGGAGCCGCTGAAGAA 2350
Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC------ATCGGA 74920
|||||| || || || |||||||| ||||| | || || | || ||||
Sbjct 2351 GATGCCCTCCACGGCGGCGAAGGCGACGAGGCGCTCGGCAAAGGTGGCGCCGTTTTCGGC 2410
Query 74921 AGTCATCCAAGTCTGAGCCCA-TTCAGCTT-TTCGTTTGACCGCAGGG-ACAGTATCGAT 74977
| | |||| | | ||||| ||| ||| |||| || ||||||| | || | |||
Sbjct 2411 GGCCGTCCAGGCCATGGCCCACTTCGCCTTCTTCG--CGA-CGCAGGGCATCGTCTGGAT 2467
Query 74978 CGCTTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035
|| | ||||||| || || || || | || ||| | ||| |||| ||
Sbjct 2468 GGCGTTGAAGAGGTACTCGC--GCTGGACGCGGTCGCTGATGTAGGTGTTGATCAGCAGG 2525
Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095
|||||| ||||||| || | |||| || |||| | ||||||| | || |||
Sbjct 2526 GAGTACATCTCCGAGTGGACGTTCTCGATGGCAATCTGGAAGCCGTAGAAGCAACGGGCC 2585
Query 75096 TCTGCAATCTGT-ACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCG 75152
|| | | | || || | | |||| || ||| ||||| |||||||||||
Sbjct 2586 TCGGTGA-CGGTCACCTCGCGGATGAAGCGCTC--CGCGAGGTTCTCATTGACGATGCCG 2642
Query 75153 TCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT 75212
|| ||||||||| || ||||| || ||||||||||||||| | | | ||
Sbjct 2643 TCGCTGGCGGCGAAGAAGGCCAGAACGTGGGAGATAAAGTGGCGCTCGTTTCGATTTAGC 2702
Query 75213 T---TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTC 75269
| || ||| | ||||| | || || | ||||||||| |||||||| |||
Sbjct 2703 TCGCCGTTCCAGTGGGCGAGGTCGCGACTCAGGTCCACCTCCTCGACGGTCCAGAAGCTC 2762
Query 75270 CCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319
| ||||| ||||||| | ||| | ||| | ||| | ||| || ||
Sbjct 2763 GCCTCGGCCTTCTTGTACATCGTCCAGATGTCGGCGTACTCGATGGGGAA 2812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546623159866000
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