Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq280 129 4e-25
seq76387 109 3e-19
seq28390 93.3 3e-14
seq21746 93.3 3e-14
>seq280
Length=341618
Score = 129 bits (142), Expect = 4e-25
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | |||||| | ||||||||||||||| ||||| ||||| || || || |
Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || ||||||| | |||||||||||||| || ||||||||||| || || |
Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656
| | || ||||| || ||| ||| | |||||| | || |||||| |||
Sbjct 104775 GAATACCTTCCTTATCCTGGAT-TTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCA 104833
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||| ||| || ||||||||||| | || ||||| || ||||||||
Sbjct 104834 ACCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| ||||| || ||||||||| ||||| || || || | || ||
Sbjct 105578 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 105637
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || ||||| || ||||||||||| || || || || | ||||||
Sbjct 105638 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 105697
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||| ||| | ||| ||||| ||| || |||| ||
Sbjct 105698 TTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGT 105756
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||||||| |||| || |||||||| ||||||||
Sbjct 105757 GATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| ||||| || ||||||||| ||||| || || || | || ||
Sbjct 113824 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 113883
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || ||||| || ||||||||||| || || || || | ||||||
Sbjct 113884 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 113943
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||| ||| | ||| ||||| ||| || |||| ||
Sbjct 113944 TTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGT 114002
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||||||| |||| || |||||||| ||||||||
Sbjct 114003 GATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||||||||||| || ||||||||| ||||||||||| ||
Sbjct 104885 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGAC 104944
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| || || || ||||| || |||||||||||||| || || ||
Sbjct 104945 AAAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 105004
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| || || ||||| |||| || | |||||| | || |||||| ||| ||
Sbjct 105005 ATACCTTCTTTGTCCTGGATC-TTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAAC 105063
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || ||||| || || | || || || ||||| |||||
Sbjct 105064 CTCCAAGGTGATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||||||||| || ||||||||| ||||| || || || | || |||
Sbjct 105350 AGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGC 105409
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || ||||| ||||| || ||||| || ||||| || || | || |||
Sbjct 105410 CCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCC 105469
Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 105470 TTGTCT-TGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGT 105528
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| ||||| || || | || ||||| || || |||||
Sbjct 105529 TATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||||||||||| || ||||||||| ||||| || || ||
Sbjct 105113 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 105172
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || ||||||| | |||||||||||| || || ||||| ||||| || || ||
Sbjct 105173 AAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGA 105232
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || || ||| ||| || | || ||| | || |||||| ||| ||
Sbjct 105233 ATGCCTTCTTTATCT-TGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAAC 105291
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || |||||||| |||| || ||||| || || |||||
Sbjct 105292 CTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| || ||||| || || ||| ||||| ||||||||||| || | || ||
Sbjct 106034 AGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGG 106093
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || ||||| || |||||||||||||| || || || | || |||
Sbjct 106094 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCC 106153
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| ||| ||| | ||| || | || || || || || |||| ||
Sbjct 106154 TTATCTTGGAT-TTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGT 106212
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || ||||| ||||| || |||||
Sbjct 106213 GATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| || ||||| || || ||| ||||| ||||||||||| || | || ||
Sbjct 114280 AGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGG 114339
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || ||||| || |||||||||||||| || || || | || |||
Sbjct 114340 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCC 114399
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| ||| ||| | ||| || | || || || || || |||| ||
Sbjct 114400 TTATCTTGGAT-TTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGT 114458
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || || ||||| ||||| || |||||
Sbjct 114459 GATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
>seq76387
Length=1185
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | ||||| | |||| ||||| ||| ||||||||| ||||| || || ||
Sbjct 188 GCCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 247
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || ||| |||| || || || || || || || || | |||||| |||||||| ||
Sbjct 248 GAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 307
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| |||| || | || || | ||| ||||| | |||||
Sbjct 308 AATGCCCTCCTTGTCTTGGATC-TTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 366
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | || ||||| || ||||| | || || || || ||||||||
Sbjct 367 CCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415
Score = 96.9 bits (106), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || ||| |||||| || ||||| ||||| || || || ||
Sbjct 771 AGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGA 830
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || || || || || | |||||| |||||||| || | ||||||
Sbjct 831 CCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 890
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | || || || | |||||| || | |||
Sbjct 891 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGT 949
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| | || |||||||| |||||||||
Sbjct 950 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 989
>seq28390
Length=4902
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| || |||||| || || || || || ||||| || || |||| ||
Sbjct 516 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 457
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| ||||||||||| || || | |||||| ||||| || || | ||||||||||| |
Sbjct 456 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 397
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| |||| || || | || || || | ||| || || | ||| || || ||
Sbjct 396 ATC-TTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTT 338
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || | || |||||||| || ||||||||
Sbjct 337 GCCCGTGAGGGTCTTCACAAAGATTTGCATGTT 305
>seq21746
Length=7614
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| ||||| || ||||||||||||||| || || || | || ||
Sbjct 2413 AGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGA 2354
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | ||| || ||||| || || ||||| ||||| || || || | || ||
Sbjct 2353 CCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCT 2294
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| ||| ||| | || || | || ||||| ||| || |||| ||
Sbjct 2293 TTATCTTGGAT-TTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGT 2235
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || | ||||| || ||||||||||| |||
Sbjct 2234 GATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTG 2192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314397154074110
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