Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq280 129 4e-25 seq76387 109 3e-19 seq28390 93.3 3e-14 seq21746 93.3 3e-14 >seq280 Length=341618 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | ||||||||||||||| ||||| ||||| || || || | Sbjct 104655 CGCCTCCGCGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTCTGAATATTGTAGTCGG 104714 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || ||||||| | |||||||||||||| || ||||||||||| || || | Sbjct 104715 ACAAAGTACGGCCGTCTTCCAACTGTTTACCGGCAAAAATCAAACGCTGTTGATCTGGAG 104774 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | || ||||| || ||| ||| | |||||| | || |||||| ||| Sbjct 104775 GAATACCTTCCTTATCCTGGAT-TTTGGCTTTAACATTTTCGATGGTGTCTGACGGCTCA 104833 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| || ||||||||||| | || ||||| || |||||||| Sbjct 104834 ACCTCCAAGGTGATGGTTTTACCGGTCAGTGTCTTCACGAAGATCTGCAT 104883 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || || | || || Sbjct 105578 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 105637 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || ||||||||||| || || || || | |||||| Sbjct 105638 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 105697 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| | ||| ||||| ||| || |||| || Sbjct 105698 TTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGT 105756 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| |||| || |||||||| |||||||| Sbjct 105757 GATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 105795 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| || ||||||||| ||||| || || || | || || Sbjct 113824 AGACGCAGAACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGG 113883 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || ||||||||||| || || || || | |||||| Sbjct 113884 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGAGGAATACCCTCC 113943 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | ||| ||| | ||| ||||| ||| || |||| || Sbjct 113944 TTGTCCTGGATC-TTAGCTTTGACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAACGT 114002 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| |||| || |||||||| |||||||| Sbjct 114003 GATGGTTTTACCAGTTAGGGTCTTCACAAATATCTGCAT 114041 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||||||||| || ||||||||| ||||||||||| || Sbjct 104885 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTATAATCGGAC 104944 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || ||||| || |||||||||||||| || || || Sbjct 104945 AAAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG 105004 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| |||| || | |||||| | || |||||| ||| || Sbjct 105005 ATACCTTCTTTGTCCTGGATC-TTGGCCTTAACGTTCTCGATGGTGTCTGACGGCTCAAC 105063 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || || || ||||| ||||| Sbjct 105064 CTCCAAGGTGATGGTTTTGCCAGTCAGAGTCTTGACGAAAATTTGCAT 105111 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||| || ||||||||| ||||| || || || | || ||| Sbjct 105350 AGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGACAAGGTGCGC 105409 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || ||||| ||||| || ||||| || ||||| || || | || ||| Sbjct 105410 CCGTCTTCGAGCTGCTTACCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCC 105469 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| | ||| ||||| ||| || |||| ||| Sbjct 105470 TTGTCT-TGAATCTTGGCCTTGACGTTTTCAATGGTGTCGGATGGCTCAACCTCCAAGGT 105528 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| ||||| || || | || ||||| || || ||||| Sbjct 105529 TATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 105567 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||||||||| || ||||||||| ||||| || || || Sbjct 105113 CCACCGCGAAGACGCAGGACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCCGAC 105172 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | |||||||||||| || || ||||| ||||| || || || Sbjct 105173 AAGGTGCGGCCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGTTGTTGATCTGGAGGA 105232 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| || | || ||| | || |||||| ||| || Sbjct 105233 ATGCCTTCTTTATCT-TGAATCTTGGCCTTGACGTTTTCGATGGTGTCTGACGGCTCAAC 105291 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || |||||||| |||| || ||||| || || ||||| Sbjct 105292 CTCCAAGGTGATGGTTTTACCAGTTAGGGTCTTCACGAAGATTTGCAT 105339 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || ||||| || || ||| ||||| ||||||||||| || | || || Sbjct 106034 AGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGG 106093 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || |||||||||||||| || || || | || ||| Sbjct 106094 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCC 106153 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | || || || || || |||| || Sbjct 106154 TTATCTTGGAT-TTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGT 106212 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| ||||| || ||||| Sbjct 106213 GATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || ||||| || || ||| ||||| ||||||||||| || | || || Sbjct 114280 AGACGCAGGACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAGGTGCGG 114339 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || |||||||||||||| || || || | || ||| Sbjct 114340 CCATCTTCGAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGGATACCTTCC 114399 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | || || || || || |||| || Sbjct 114400 TTATCTTGGAT-TTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGT 114458 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| ||||| || ||||| Sbjct 114459 GATGGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 >seq76387 Length=1185 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||| ||||| ||| ||||||||| ||||| || || || Sbjct 188 GCCGCCGCGCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGA 247 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || || || || || || || || | |||||| |||||||| || Sbjct 248 GAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGG 307 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| || | || || | ||| ||||| | ||||| Sbjct 308 AATGCCCTCCTTGTCTTGGATC-TTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 366 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || ||||| || ||||| | || || || || |||||||| Sbjct 367 CCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| || ||||| ||||| || || || || Sbjct 771 AGACGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGA 830 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || || || || | |||||| |||||||| || | |||||| Sbjct 831 CCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 890 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || || || | |||||| || | ||| Sbjct 891 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGT 949 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || |||||||| ||||||||| Sbjct 950 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 989 >seq28390 Length=4902 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || |||||| || || || || || ||||| || || |||| || Sbjct 516 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 457 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||||||||| || || | |||||| ||||| || || | ||||||||||| | Sbjct 456 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 397 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| || || | || || || | ||| || || | ||| || || || Sbjct 396 ATC-TTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTT 338 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | || |||||||| || |||||||| Sbjct 337 GCCCGTGAGGGTCTTCACAAAGATTTGCATGTT 305 >seq21746 Length=7614 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || ||||||||||||||| || || || | || || Sbjct 2413 AGACGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGACAAAGTACGA 2354 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || ||||| || || ||||| ||||| || || || | || || Sbjct 2353 CCATCTTCCAATTGCTTGCCGGCGAAAATCAAACGTTGTTGATCTGGTGGTATACCTTCT 2294 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | || || | || ||||| ||| || |||| || Sbjct 2293 TTATCTTGGAT-TTTAGCCTTGACATTTTCGATAGTGTCAGAAGGCTCGACCTCCAAAGT 2235 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | ||||| || ||||||||||| ||| Sbjct 2234 GATGGTCTTGCCCGTAAGTGTTTTGACGAAAATCTGCATTTTG 2192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314397154074110