Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq31836 279 2e-70
>seq31836
Length=4037
Score = 279 bits (308), Expect = 2e-70
Identities = 353/480 (74%), Gaps = 9/480 (2%)
Strand=Plus/Plus
Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963
||||||||||||| ||||| ||||||| ||| | | |||||||||||||| |||| |
Sbjct 2321 TGAACCGCCCCGGTTTTCCGGGAGAGTTTTTAGTACGGGAACTCAGGCTGCCTGATCTT- 2379
Query 32964 GTTTCC--GATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGC 33021
| ||| | |||||||||||| | || |||||||| | |||| || ||| |
Sbjct 2380 -TATCCATCAGGGAAGCATAATACGTTTGCTCTGCTTCAACTGGAGCTACATAGCCGATG 2438
Query 33022 CTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCAC- 33080
| | |||||||||| || ||||| |||||| ||||| | || |||| |||||
Sbjct 2439 CGTTCCAGCAATCGGCGGTTGTTGAACCAGTTTACCCAGTCCAACGTCGCCAACTCCACA 2498
Query 33081 TTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGAT 33140
| |||| | |||||||| |||| ||||||||||||||||||||||| | || |||||
Sbjct 2499 TCCTGC-CTATTTTTCCAACTCTGCCGGTGTATTACCTCCGCTTTGTATAACCCGTTGAT 2557
Query 33141 GCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCC 33200
|| || |||| |||||||||||||||||| ||| | ||| |||||||| | |
Sbjct 2558 ACTTTCTGCCAACGCGTTGTCATACGAGTCACCTACGGTACCTACTGATGCCATCGCTTC 2617
Query 33201 GGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTG 33260
|| ||||| | ||| | |||||| ||||| || || || || ||||| ||| || ||
Sbjct 2618 AGCCTCTTTCAATCGTTGCGTATACGCCAGAGAGACGTATTGGGAGCCACGATCACTATG 2677
Query 33261 ATGGATGGTG---CCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCAC 33317
||||||| || ||| || | | |||||| |||||||| ||||| || ||||| ||
Sbjct 2678 ATGGATGATGCCACCATCTGGTCTTCTGGCCCATAACGCCTGTTCCAGTGCGTCCAGAAC 2737
Query 33318 GAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATC 33377
|| | |||||||| | ||||| || ||||||||||| || || || ||||||||
Sbjct 2738 CAACGAGGTTTCCATGGTTGATGACACTCGCCACCCCACAATAACACCAGCGAACACATC 2797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 210708395350920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |