Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq81708 174 2e-38 seq85787 138 1e-27 >seq81708 Length=1085 Score = 174 bits (192), Expect = 2e-38 Identities = 144/176 (82%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||||| ||||| || |||||||| || | |||||| | ||| ||||| Sbjct 248 TCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGC 307 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 || || ||||||||||| |||||||||| ||| ||||||||||||||||| | || || Sbjct 308 ACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCA 367 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 || || |||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 368 TCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423 >seq85787 Length=1013 Score = 138 bits (152), Expect = 1e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||||||||| | || || || |||||| || || || |||||||||||||| Sbjct 602 GTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAGCGTACA 661 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 || ||||| ||||| || |||||||||||||||||||| |||||||| || | || ||| Sbjct 662 GCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATGGCATCC 721 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTT 48991 | ||| | |||||| || ||||| |||||||| || ||||| ||||| || || Sbjct 722 AACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGATGTT 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531497164763600