Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028686.1
Length=166313
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 174 2e-38
seq85787 138 1e-27
>seq81708
Length=1085
Score = 174 bits (192), Expect = 2e-38
Identities = 144/176 (82%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872
|| || || ||||||| ||||| || |||||||| || | |||||| | ||| |||||
Sbjct 248 TCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGC 307
Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932
|| || ||||||||||| |||||||||| ||| ||||||||||||||||| | || ||
Sbjct 308 ACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCA 367
Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988
|| || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 368 TCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423
>seq85787
Length=1013
Score = 138 bits (152), Expect = 1e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875
||||||||||| | || || || |||||| || || || ||||||||||||||
Sbjct 602 GTGAAAGTACGTGTAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAGCGTACA 661
Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935
|| ||||| ||||| || |||||||||||||||||||| |||||||| || | || |||
Sbjct 662 GCATAGCCAGAAACGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATGGCATCC 721
Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTT 48991
| ||| | |||||| || ||||| |||||||| || ||||| ||||| || ||
Sbjct 722 AACAGCATCTCACGATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGATGTT 777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531497164763600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |