Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq85787 113 5e-20 seq81708 102 8e-17 >seq85787 Length=1013 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 55554 TAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACGGCATACCCAGAAA 55613 |||| ||||||| | ||| ||| ||| || || || || | || ||||| ||||||| Sbjct 615 TAATTACATCTTTCTGCTGCTCTTTAGTGAGCGAGTTGAAGCGTACAGCATAGCCAGAAA 674 Query 55614 CGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAACAACATTTCTT 55673 |||| || || | || |||||||| || |||||||| | ||||| |||| ||| || Sbjct 675 CGCGGATGGTCAGCTGCGGATATTTCTCCGGATGTTCCATGGCATCCAACAGCATCTCAC 734 Query 55674 TATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGAT 55713 ||| | || ||||| ||||||||||| ||||||||||| Sbjct 735 GATTCATTACGTTGACGTTCAGATGTTGACCACCTTCGAT 774 >seq81708 Length=1085 Score = 102 bits (112), Expect = 8e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 55538 TCAGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTG 55597 || |||||||| | |||||||||| | ||| |||| ||||| | ||||| | Sbjct 248 TCGGTAAATGTACGAGTAATAACATCACGCTGCTGCTCTGGCGTCAGCGCGTTAAAGCGC 307 Query 55598 ACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCA 55657 |||||||| || ||||||||||| || || |||||||||||||| ||||| | ||| Sbjct 308 ACGGCATAGCCGGAAACGCGAATGGTCAACTGTGGATATTTTTCCGGATGGTTCACGGCA 367 Query 55658 TCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTCGAT 55713 ||| |||| |||| | || || || || ||||| || || |||||||| || Sbjct 368 TCTTCCAACGTTTCACGACGCAGTACGTTTACGTTCAGGTGCTGACCACCTTCAAT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517675355206800