Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq81708 205 1e-47 seq85787 138 1e-27 >seq81708 Length=1085 Score = 205 bits (226), Expect = 1e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101879 CCGTGAAATTGAAATTGAGCCACAACCTACAGTTAAAATTGAAGGTGGTCAACACCTGAA 101938 |||||||||| | |||||| |||| || |||||||||||||| |||||||| Sbjct 460 CCGTGAAATTCCACTTGAGCAGAAACCGCAGGTGCGTATTGAAGGTGGTCAGCACCTGAA 401 Query 101939 CGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCC 101998 ||| ||||| ||||||||||||| |||||||||| || || ||||||||||||||||| Sbjct 400 CGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAACCATCCGGAAAAATATCC 341 Query 101999 GCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACA 102058 ||| ||||||| || || ||||| ||||| || ||||||||| | ||||| || || || Sbjct 340 ACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACGCGCTGACGCCAGAGCA 281 Query 102059 GCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTGTAATGGCA 102106 |||||| || ||||| ||||||| || ||||| || |||||| ||| Sbjct 280 GCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAATTGCA 233 >seq85787 Length=1013 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 101913 AAAATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGAT 101972 || || |||||||||||||| |||||||| ||||| || |||||| | ||| ||| Sbjct 777 AACATCGAAGGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGAT 718 Query 101973 GCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTT 102032 || | | |||||||| ||||||||||||||||||||||| || || || ||||| || Sbjct 717 GCCATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTA 658 Query 102033 CGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAG 102092 ||||| ||||| || ||| || |||||| || || || | ||||| |||||| || Sbjct 657 CGCTTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCACCCAG 598 Query 102093 AGTTTGTAATGGCA 102106 ||||||| ||| Sbjct 597 TCGTTGTAATCGCA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534089553188800