Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 205 1e-47
seq85787 138 1e-27
>seq81708
Length=1085
Score = 205 bits (226), Expect = 1e-47
Identities = 182/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101879 CCGTGAAATTGAAATTGAGCCACAACCTACAGTTAAAATTGAAGGTGGTCAACACCTGAA 101938
|||||||||| | |||||| |||| || |||||||||||||| ||||||||
Sbjct 460 CCGTGAAATTCCACTTGAGCAGAAACCGCAGGTGCGTATTGAAGGTGGTCAGCACCTGAA 401
Query 101939 CGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCC 101998
||| ||||| ||||||||||||| |||||||||| || || |||||||||||||||||
Sbjct 400 CGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAACCATCCGGAAAAATATCC 341
Query 101999 GCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACA 102058
||| ||||||| || || ||||| ||||| || ||||||||| | ||||| || || ||
Sbjct 340 ACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACGCGCTGACGCCAGAGCA 281
Query 102059 GCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTGTAATGGCA 102106
|||||| || ||||| ||||||| || ||||| || |||||| |||
Sbjct 280 GCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAATTGCA 233
>seq85787
Length=1013
Score = 138 bits (152), Expect = 1e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 101913 AAAATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGAT 101972
|| || |||||||||||||| |||||||| ||||| || |||||| | ||| |||
Sbjct 777 AACATCGAAGGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGAT 718
Query 101973 GCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTT 102032
|| | | |||||||| ||||||||||||||||||||||| || || || ||||| ||
Sbjct 717 GCCATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTA 658
Query 102033 CGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAG 102092
||||| ||||| || ||| || |||||| || || || | ||||| |||||| ||
Sbjct 657 CGCTTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCACCCAG 598
Query 102093 AGTTTGTAATGGCA 102106
||||||| |||
Sbjct 597 TCGTTGTAATCGCA 584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534089553188800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |