Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028840.1
Length=111751
Score E
Sequences producing significant alignments: (Bits) Value
seq85787 107 1e-18
seq81708 107 1e-18
>seq85787
Length=1013
Score = 107 bits (118), Expect = 1e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCA 106631
|| |||||||||||||| || || ||||| || | | |||||| ||| ||||||||
Sbjct 774 ATCGAAGGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCC 715
Query 106632 CAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGT 106691
| ||||||| || ||||| || || | || ||||| ||||| || || ||||||||
Sbjct 714 ATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGC 655
Query 106692 TTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTACTCAGGCG 106751
|| || | || || || || ||||| || || |||| ||||| || || ||| ||
Sbjct 654 TTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCACCCAGTCG 595
Query 106752 ATGTAAT 106758
||||||
Sbjct 594 TTGTAAT 588
>seq81708
Length=1085
Score = 107 bits (118), Expect = 1e-18
Identities = 130/175 (74%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTG--GATG 106629
|||||||||||||| ||||| || || || || | ||||||| | | || | ||||
Sbjct 423 ATTGAAGGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGA--AACGTTGGAAGATG 366
Query 106630 CACAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTAC 106689
| ||| ||||| |||||||| || || || || || || ||||| || || || || |
Sbjct 365 CCGTGAACCATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGC 306
Query 106690 GTTTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744
| ||||| || ||||||| || || ||| || ||||||| ||||||||||||
Sbjct 305 GCTTTAACGCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTAC 251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357100798917440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |