Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq85787 107 1e-18 seq81708 107 1e-18 >seq85787 Length=1013 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCA 106631 || |||||||||||||| || || ||||| || | | |||||| ||| |||||||| Sbjct 774 ATCGAAGGTGGTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCC 715 Query 106632 CAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGT 106691 | ||||||| || ||||| || || | || ||||| ||||| || || |||||||| Sbjct 714 ATGGAACATCCGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGC 655 Query 106692 TTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTACTCAGGCG 106751 || || | || || || || ||||| || || |||| ||||| || || ||| || Sbjct 654 TTCAACTCGCTCACTAAAGAGCAGCAGAAAGATGTAATTACACGTACTTTCACCCAGTCG 595 Query 106752 ATGTAAT 106758 |||||| Sbjct 594 TTGTAAT 588 >seq81708 Length=1085 Score = 107 bits (118), Expect = 1e-18 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTG--GATG 106629 |||||||||||||| ||||| || || || || | ||||||| | | || | |||| Sbjct 423 ATTGAAGGTGGTCAGCACCTGAACGTAAACGTACTGCGTCGTGA--AACGTTGGAAGATG 366 Query 106630 CACAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTAC 106689 | ||| ||||| |||||||| || || || || || || ||||| || || || || | Sbjct 365 CCGTGAACCATCCGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGC 306 Query 106690 GTTTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744 | ||||| || ||||||| || || ||| || ||||||| |||||||||||| Sbjct 305 GCTTTAACGCGCTGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTAC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357100798917440