Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq52999 655 0.0 >seq52999 Length=1923 Score = 655 bits (726), Expect = 0.0 Identities = 1259/1828 (69%), Gaps = 61/1828 (3%) Strand=Plus/Plus Query 19573 CCAGCTCATCATCAAACCGCAGAAAACCGGCGGTGACTTCAAGGAAATTGACCTGCTGGG 19632 |||||||||||| || |||||| || |||||||||||||| |||||||||| Sbjct 110 CCAGCTCATCATGAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGC 169 Query 19633 ACGTCAGATTGAACGACTGGCACGGGTCAACCGCTACAGTCAGACCGGCAACGAGGCAGA 19692 || ||| || || | || ||| || | | ||| | |||||| || || || Sbjct 170 GCGGCAGTCCGAGCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGA 229 Query 19693 CCTTAATCCGAACGTCGCTAACCGCAACAAAGGCGGGCGTCGCAAACCGAAAAAGAATTT 19752 ||| ||||||||||| | ||||||||||| ||| |||| ||| ||||||| | Sbjct 230 CCTGAATCCGAACGTGGAGAACCGCAACAAGGGCCCGCGTAAGCCCCCGGAAAAGAACCT 289 Query 19753 TTTCAGTGACGAGGCCATCGAAAAGCTGGAGCAGATTTTCTTTGAGCAGTCTTTCGAATA 19812 ||||| ||||| || || |||||| || || ||||| | | |||| || Sbjct 290 GTTCAGCGACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTA 349 Query 19813 TCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATATCCTGAAATCCCG 19872 ||| || |||| |||||| | || || | ||||| | | ||||| || || Sbjct 350 CCAGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCG 409 Query 19873 CCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTGAAAACCGG 19932 ||||||||| || || || | |||| |||||||||||||| | || |||| ||||| Sbjct 410 CCAGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGG 469 Query 19933 TCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTCCGCGAATACAT 19992 | || ||||| || || || |||||||| |||||||| | || ||| | ||||| Sbjct 470 GCGCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACAT 529 Query 19993 CATCGCCTTTGCCCGGCTGGTTGACGTTGACCTGACCGGTGACCCGATTGTCCTGGGCAA 20052 ||| | |||||||| ||| ||||| ||||||| || ||||||| || | | || Sbjct 530 CATTGAATTTGCCCGCGAGGTGGACGTAGACCTGAAGGGCGACCCGA-TGAC--GCTCAG 586 Query 20053 TAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCACAGAGCCATAACGG 20112 |||||| || ||| ||| || ||||||||| || |||||| |||||| || |||| Sbjct 587 TAACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGG 646 Query 20113 CGACCTGTACGTCGACGAGATTTTCTGGATCCCGAATTTTCAGGTACTGCGTAAGGTGGC 20172 | | |||||| | || || ||||||||||||||| ||||||| ||||| || ||||| Sbjct 647 CAATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGC 706 Query 20173 ATCAGGTATGGC-CT-CACAGAGTCACCTGCGCTCGACCTATTTCTCCACCCCGTCCACG 20230 || || ||||| || |||| || | |||| ||||| || ||||||||||||| Sbjct 707 GTCCGGCATGGCGCTGCACA-AG-AAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGC 764 Query 20231 CTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGAACTGTTCAACCGGGGACGCGCCAGC 20290 || ||||| |||||| ||||||||||| ||| | ||||||| ||| || |||| Sbjct 765 CTCACGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCA-- 822 Query 20291 GCCGCCGAACGCGTGGAAATCGACGTCAGTCATAACGCCCTTGCCGGAGGTCTTCTCTGT 20350 || || || || || || ||| |||| ||| | | || |||| |||| ||||| Sbjct 823 -AAGCTGACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGC 881 Query 20351 GCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCACG 20410 | |||||||||| || ||||| |||||| |||| || || || |||||||| Sbjct 882 GAAGACGGCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGAC 941 Query 20411 CTGTTCGACATTGAGCAGCT-CAAACGTGAAAACAGCGCCGACGATTTTAAAAACCTGTT 20469 ||||| ||| | |||||||| | ||| | ||||| | || |||| | |||||| | Sbjct 942 CTGTTTGACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCT 1000 Query 20470 CATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTCCCGTTCGAGGAGCTGCAACGTTG 20529 ||||| | ||| | ||||| ||||||||| |||| | | | |||||| || Sbjct 1001 GATGTGCGTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATG 1060 Query 20530 CATGGTCGACACGCT-GGAAGAATGGGAAGACTATGCGCCGTTTGC----CGCAAATCCG 20584 |||||| |||| ||| ||||| ||| |||| || | || | || ||| ||| Sbjct 1061 CATGGTGGACA-GCTGGGAAGTCTGGACCGACTTTGAGGCGCTGGCGCTGCGC----CCG 1115 Query 20585 TTCGGCTCCCGCCCGGTATGGATTGGTTACGACCC-------GTCACACCG--TGGCGAC 20635 ||||||| || ||||| || |||||||| | || | | |||||| Sbjct 1116 TTCGGCTGGAAAGAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGGCGAC 1175 Query 20636 AGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAATTCAGAATACTT 20695 ||||||||||||||||| |||||||||| | ||| | || ||||| ||| | || ||| Sbjct 1176 AGCGCCGGATGCGTGGTCATGGCACCGCCTGCCGTGCCGGGCGGCAAGTTCCGCATCCTT 1235 Query 20696 GAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCCATCCGCAAACTC 20755 ||||||||||||||| || |||||||| | ||||| || ||||| | | || Sbjct 1236 GAGCGTCACCAGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGCCATCAGGACGCTG 1295 Query 20756 ACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGCCTCGGTGTCGGCGTG 20815 || | | |||||||| || ||||| || || |||||||| |||| | ||||| Sbjct 1296 ACGCAGCAGTATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTTGGCGTA 1355 Query 20816 TTCCAGCTCGTGCGCTCGTTCTATCCCGC-CGCGCGCGATATCCGCTACACGCCGGAAAT 20874 | | || || | |||| |||||| | | || | ||| | ||| | | Sbjct 1356 TACGAGAATGTCAAAGCCTTCT-TCCCGCAGGTGAAGGAGTTTGTCTATAACCCGAACGT 1414 Query 20875 GAAAACCGCAATGGTGCTCAAGGCAAAAGACGTTATCCGCCGTGGCTGTCTGGAATATGA 20934 ||||| ||| ||||||| ||||| | ||| ||| | | || | ||||| | ||| Sbjct 1415 GAAAAACGCCCTGGTGCTGAAGGCTTACGACACCATCGCCAGCGGGCGGCTGGAGTTTGA 1474 Query 20935 CGTCAGCGCCACCGACATCAC-CAGCTCGTTTATGGCTATCCGCAAGACCATGACCAGCA 20993 || |||| | ||||||| | ||| || |||||| |||||||||| ||| || || Sbjct 1475 CGCCAGCCACCTCGACATCGCGCAG-TCATTTATGTCTATCCGCAAAGCCACCACGGCCA 1533 Query 20994 GCGGACGCAGCGCCACCTATGAGGCCAGCCGCAGCGAGGAAGCCAGCCACGCCGATCTCG 21053 |||| | | | |||||||| |||||||||||||||||| |||||||| |||| | | Sbjct 1534 GCGGCAACCGTCCGACCTATGAAACCAGCCGCAGCGAGGAAGTCAGCCACGGCGATTTAG 1593 Query 21054 CCTGGGCGACTATGCACGCCCTGTTAAATGAGCCACT-CACCGCCGGTATCAGCAC-CCC 21111 |||||||||| |||||||| ||| ||| ||||| || || | | | | |||| | | Sbjct 1594 CCTGGGCGACCATGCACGCGCTGGCAAACGAGCCGCTGCAGGGACAG--GCGGCACACAC 1651 Query 21112 GCTGACATCCACCATTCTGGAGTTTTACTGATGAGTAA--GAAAAAAGGGAAAACAC-CG 21168 || | | |||| ||||| |||||||||||| || | | || | | | | || Sbjct 1652 GCAG------AACATTGTGGAGATTTACTGATGAGCAAACGCAGGAACCGCACCCGCACG 1705 Query 21169 CAGC--------CAGCGGTGAAAACAATGACTGCCAGCGCCCCGAAAATGGAGGCATTCA 21220 |||| |||| | || ||| |||| |||||| | |||||| || | Sbjct 1706 CAGCCCGTGCCGCAGCCG-GATAAC-ATGA---CCAGCGGGGCAGCGTCGGAGGCGTTTA 1760 Query 21221 CCTTTGGTGAGCCGGTGCCGGTACTCGACCGCCGTGATATTCTGGATTACGTCGAGTGCA 21280 ||||||| || ||| | ||||| || |||||||| || | ||||| ||||| |||||| Sbjct 1761 CCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAACTGCTGGACTACGTGGAGTGCG 1820 Query 21281 TCAGTAACGGCAGATGGTATGAGCCACCGGTCAGCTTTACCGGTCTGGCAAAAAGCCTGC 21340 | | || | | |||||||| ||||| || ||| || ||| ||||| | | | Sbjct 1821 TTATCAATGATCGCTGGTATGAACCACCCGTGAGCGTTGACGGGCTGGCGCGCACGTTCC 1880 Query 21341 GTGCTGCCGTGCATCACAGCTCACCGAT 21368 | || |||||||||||||||||||| || Sbjct 1881 GCGCCGCCGTGCATCACAGCTCACCCAT 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104330911345980