Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028896.1
Length=32675
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 655 0.0
>seq52999
Length=1923
Score = 655 bits (726), Expect = 0.0
Identities = 1259/1828 (69%), Gaps = 61/1828 (3%)
Strand=Plus/Plus
Query 19573 CCAGCTCATCATCAAACCGCAGAAAACCGGCGGTGACTTCAAGGAAATTGACCTGCTGGG 19632
|||||||||||| || |||||| || |||||||||||||| ||||||||||
Sbjct 110 CCAGCTCATCATGAAGGAGCAGAAGGAAGGAAAGGACTTCAAGGAAATCGACCTGCTGGC 169
Query 19633 ACGTCAGATTGAACGACTGGCACGGGTCAACCGCTACAGTCAGACCGGCAACGAGGCAGA 19692
|| ||| || || | || ||| || | | ||| | |||||| || || ||
Sbjct 170 GCGGCAGTCCGAGCGCCATGCCCGGATCGGCAAATTCAGCAATGGCGGCAATGAAGCGGA 229
Query 19693 CCTTAATCCGAACGTCGCTAACCGCAACAAAGGCGGGCGTCGCAAACCGAAAAAGAATTT 19752
||| ||||||||||| | ||||||||||| ||| |||| ||| ||||||| |
Sbjct 230 CCTGAATCCGAACGTGGAGAACCGCAACAAGGGCCCGCGTAAGCCCCCGGAAAAGAACCT 289
Query 19753 TTTCAGTGACGAGGCCATCGAAAAGCTGGAGCAGATTTTCTTTGAGCAGTCTTTCGAATA 19812
||||| ||||| || || |||||| || || ||||| | | |||| ||
Sbjct 290 GTTCAGCGACGAACAGATTGAGAAGCTGCAGGAGGTTTTCCACGGCTCGATGTTCGGCTA 349
Query 19813 TCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATATCCTGAAATCCCG 19872
||| || |||| |||||| | || || | ||||| | | ||||| || ||
Sbjct 350 CCAGCGCCAGTGGTGGGAGGCCGGGAATAAGTACTCCGTCCGCAACCTGCTGAAGTCGCG 409
Query 19873 CCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTGAAAACCGG 19932
||||||||| || || || | |||| |||||||||||||| | || |||| |||||
Sbjct 410 CCAGATTGGGGCCACCTTCTTTTTTGCCCGCGAGGCGCTGATCGATGCGCTGACCACCGG 469
Query 19933 TCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTCCGCGAATACAT 19992
| || ||||| || || || |||||||| |||||||| | || ||| | |||||
Sbjct 470 GCGCAATCAGATATTCCTTTCAGCCAGTAAGGCGCAGGCGCACGTCTTCAAGCAGTACAT 529
Query 19993 CATCGCCTTTGCCCGGCTGGTTGACGTTGACCTGACCGGTGACCCGATTGTCCTGGGCAA 20052
||| | |||||||| ||| ||||| ||||||| || ||||||| || | | ||
Sbjct 530 CATTGAATTTGCCCGCGAGGTGGACGTAGACCTGAAGGGCGACCCGA-TGAC--GCTCAG 586
Query 20053 TAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCACAGAGCCATAACGG 20112
|||||| || ||| ||| || ||||||||| || |||||| |||||| || ||||
Sbjct 587 TAACGGTGCGTGCCTGTATTTCCTGGGCACCAACGCCCGCACCGCGCAGAGCTATCACGG 646
Query 20113 CGACCTGTACGTCGACGAGATTTTCTGGATCCCGAATTTTCAGGTACTGCGTAAGGTGGC 20172
| | |||||| | || || ||||||||||||||| ||||||| ||||| || |||||
Sbjct 647 CAATCTGTACCTGGATGAATATTTCTGGATCCCGAAGTTTCAGGAACTGCAGAAAGTGGC 706
Query 20173 ATCAGGTATGGC-CT-CACAGAGTCACCTGCGCTCGACCTATTTCTCCACCCCGTCCACG 20230
|| || ||||| || |||| || | |||| ||||| || |||||||||||||
Sbjct 707 GTCCGGCATGGCGCTGCACA-AG-AAGTGGCGCGAAACCTACTTTTCCACCCCGTCCAGC 764
Query 20231 CTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGAACTGTTCAACCGGGGACGCGCCAGC 20290
|| ||||| |||||| ||||||||||| ||| | ||||||| ||| || ||||
Sbjct 765 CTCACGCACAGCGCCTATCCGTTCTGGTCCGGTTCGCAGTTCAACAAGGGCCGGGCCA-- 822
Query 20291 GCCGCCGAACGCGTGGAAATCGACGTCAGTCATAACGCCCTTGCCGGAGGTCTTCTCTGT 20350
|| || || || || || ||| |||| ||| | | || |||| |||| |||||
Sbjct 823 -AAGCTGACCGGGTTGATATTGACCTCAGCCATCAGTCACTGGCCGCCGGTCGCCTCTGC 881
Query 20351 GCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCACG 20410
| |||||||||| || ||||| |||||| |||| || || || ||||||||
Sbjct 882 GAAGACGGCCAGTTTCGCCAGATCGTCACCGTTGAAGATGCGGTGCGCGGCGGCTGTGAC 941
Query 20411 CTGTTCGACATTGAGCAGCT-CAAACGTGAAAACAGCGCCGACGATTTTAAAAACCTGTT 20469
||||| ||| | |||||||| | ||| | ||||| | || |||| | |||||| |
Sbjct 942 CTGTTTGACCTGGAGCAGCTGCGCACGCG-CTACAGCCCGGAGGATTACCAGAACCTGCT 1000
Query 20470 CATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTCCCGTTCGAGGAGCTGCAACGTTG 20529
||||| | ||| | ||||| ||||||||| |||| | | | |||||| ||
Sbjct 1001 GATGTGCGTCTTTATGGACGATCTGGCGTCGGTATTCCAGCTGGCCATGCTGCAGAAATG 1060
Query 20530 CATGGTCGACACGCT-GGAAGAATGGGAAGACTATGCGCCGTTTGC----CGCAAATCCG 20584
|||||| |||| ||| ||||| ||| |||| || | || | || ||| |||
Sbjct 1061 CATGGTGGACA-GCTGGGAAGTCTGGACCGACTTTGAGGCGCTGGCGCTGCGC----CCG 1115
Query 20585 TTCGGCTCCCGCCCGGTATGGATTGGTTACGACCC-------GTCACACCG--TGGCGAC 20635
||||||| || ||||| || |||||||| | || | | ||||||
Sbjct 1116 TTCGGCTGGAAAGAAGTGTGGATCGGCTACGACCCCGCGAAGGGAACGCAGAACGGCGAC 1175
Query 20636 AGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAATTCAGAATACTT 20695
||||||||||||||||| |||||||||| | ||| | || ||||| ||| | || |||
Sbjct 1176 AGCGCCGGATGCGTGGTCATGGCACCGCCTGCCGTGCCGGGCGGCAAGTTCCGCATCCTT 1235
Query 20696 GAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCCATCCGCAAACTC 20755
||||||||||||||| || |||||||| | ||||| || ||||| | | ||
Sbjct 1236 GAGCGTCACCAGTGGCGCGGGATGGACTTCCGGGCGCAGGCTGACGCCATCAGGACGCTG 1295
Query 20756 ACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGCCTCGGTGTCGGCGTG 20815
|| | | |||||||| || ||||| || || |||||||| |||| | |||||
Sbjct 1296 ACGCAGCAGTATAACGTCACCTATATCGGCATCGACTCCACCGGCGTCGGGCTTGGCGTA 1355
Query 20816 TTCCAGCTCGTGCGCTCGTTCTATCCCGC-CGCGCGCGATATCCGCTACACGCCGGAAAT 20874
| | || || | |||| |||||| | | || | ||| | ||| | |
Sbjct 1356 TACGAGAATGTCAAAGCCTTCT-TCCCGCAGGTGAAGGAGTTTGTCTATAACCCGAACGT 1414
Query 20875 GAAAACCGCAATGGTGCTCAAGGCAAAAGACGTTATCCGCCGTGGCTGTCTGGAATATGA 20934
||||| ||| ||||||| ||||| | ||| ||| | | || | ||||| | |||
Sbjct 1415 GAAAAACGCCCTGGTGCTGAAGGCTTACGACACCATCGCCAGCGGGCGGCTGGAGTTTGA 1474
Query 20935 CGTCAGCGCCACCGACATCAC-CAGCTCGTTTATGGCTATCCGCAAGACCATGACCAGCA 20993
|| |||| | ||||||| | ||| || |||||| |||||||||| ||| || ||
Sbjct 1475 CGCCAGCCACCTCGACATCGCGCAG-TCATTTATGTCTATCCGCAAAGCCACCACGGCCA 1533
Query 20994 GCGGACGCAGCGCCACCTATGAGGCCAGCCGCAGCGAGGAAGCCAGCCACGCCGATCTCG 21053
|||| | | | |||||||| |||||||||||||||||| |||||||| |||| | |
Sbjct 1534 GCGGCAACCGTCCGACCTATGAAACCAGCCGCAGCGAGGAAGTCAGCCACGGCGATTTAG 1593
Query 21054 CCTGGGCGACTATGCACGCCCTGTTAAATGAGCCACT-CACCGCCGGTATCAGCAC-CCC 21111
|||||||||| |||||||| ||| ||| ||||| || || | | | | |||| | |
Sbjct 1594 CCTGGGCGACCATGCACGCGCTGGCAAACGAGCCGCTGCAGGGACAG--GCGGCACACAC 1651
Query 21112 GCTGACATCCACCATTCTGGAGTTTTACTGATGAGTAA--GAAAAAAGGGAAAACAC-CG 21168
|| | | |||| ||||| |||||||||||| || | | || | | | | ||
Sbjct 1652 GCAG------AACATTGTGGAGATTTACTGATGAGCAAACGCAGGAACCGCACCCGCACG 1705
Query 21169 CAGC--------CAGCGGTGAAAACAATGACTGCCAGCGCCCCGAAAATGGAGGCATTCA 21220
|||| |||| | || ||| |||| |||||| | |||||| || |
Sbjct 1706 CAGCCCGTGCCGCAGCCG-GATAAC-ATGA---CCAGCGGGGCAGCGTCGGAGGCGTTTA 1760
Query 21221 CCTTTGGTGAGCCGGTGCCGGTACTCGACCGCCGTGATATTCTGGATTACGTCGAGTGCA 21280
||||||| || ||| | ||||| || |||||||| || | ||||| ||||| ||||||
Sbjct 1761 CCTTTGGCGACCCGATCCCGGTGCTGGACCGCCGCGAACTGCTGGACTACGTGGAGTGCG 1820
Query 21281 TCAGTAACGGCAGATGGTATGAGCCACCGGTCAGCTTTACCGGTCTGGCAAAAAGCCTGC 21340
| | || | | |||||||| ||||| || ||| || ||| ||||| | | |
Sbjct 1821 TTATCAATGATCGCTGGTATGAACCACCCGTGAGCGTTGACGGGCTGGCGCGCACGTTCC 1880
Query 21341 GTGCTGCCGTGCATCACAGCTCACCGAT 21368
| || |||||||||||||||||||| ||
Sbjct 1881 GCGCCGCCGTGCATCACAGCTCACCCAT 1908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104330911345980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |