Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_028943.1
Length=29237
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 639 3e-179
>seq52999
Length=1923
Score = 639 bits (708), Expect = 3e-179
Identities = 1257/1827 (69%), Gaps = 59/1827 (3%)
Strand=Plus/Minus
Query 8126 ATCGGTGAGCTGTGATGTACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 8185
|| |||||||||||||| ||||| || || | | ||||| ||| || ||| ||
Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849
Query 8186 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGG 8245
||||| |||||||| | | || | | |||||| ||||| ||||| | || ||||||
Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789
Query 8246 TCGAGTACCGGCACCGGTTCACCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 8305
|| || ||||| | ||| || |||||||| || |||||| || || | | ||||
Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732
Query 8306 Attttttt----tGCCGCA--GGTTGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAGT 8356
|| || | ||| ||| || |||| | | | | || | | ||||||||||||
Sbjct 1731 ATGTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGT 1672
Query 8357 AAAACTCCAGAATGGTGGATGTCAGCGGG-GTGCTGATACCGGCGGTG-AGTGGCTCATT 8414
||| ||||| |||| | | ||| | |||| | | | | || || ||||| ||
Sbjct 1671 AAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGTT 1620
Query 8415 TAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCT 8474
| ||| |||||||||||||||||||| | ||| |||||||| ||||||||||||||||
Sbjct 1619 TGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCT 1560
Query 8475 GGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGA 8534
|| |||||||| | | | |||||| || ||| |||||||||| |||||| ||
Sbjct 1559 GGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGA 1500
Query 8535 GCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCAC-GGCGAATAACGTCT 8592
||| | ||||||| | |||| ||||| | ||||| | || | ||||| | |||
Sbjct 1499 -CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGA-TGGTGTCG 1442
Query 8593 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGTG--CGG 8650
| ||||| ||||||| ||| |||||| | ||| | ||| | || | | | |
Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTC-CTTCACCTG 1383
Query 8651 CGGGATAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTC 8710
||||| |||| | || || | | ||||| | |||| |||||||| || || |
Sbjct 1382 CGGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGC 1324
Query 8711 CGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAA 8770
|||| || |||||| || | | || || | | ||||| |||||||| | |
Sbjct 1323 CGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGA 1264
Query 8771 AGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCG 8830
||||||| || |||||||||||||||||| || | ||| ||||| || | ||| | |
Sbjct 1263 AGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAG 1204
Query 8831 GCGGTGCCAGCACCACGCATCCGGCACTGTCGCCA--CGGTGTGAC-------GGGTCGT 8881
||||||||| |||||||||||||| |||||||| | | || | |||||||
Sbjct 1203 GCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGT 1144
Query 8882 AACCAATCCAGACCGGGCGGGAGCCGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCC 8941
| || ||||| || |||||||||| | || | || | || |||| ||
Sbjct 1143 AGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCC 1084
Query 8942 ATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCC 9000
| ||||| ||| |||| |||||||| |||||| | | | |||| |||||||||
Sbjct 1083 AGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCC 1025
Query 9001 TTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGT 9060
||||| | ||| | ||||| | |||||| | |||| || | ||||| |||||
Sbjct 1024 AGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGCGT 966
Query 9061 TTA-AGCTGCTCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGAC 9119
|||||||| | ||| ||||| ||||| || || || || |||| ||||||
Sbjct 965 GCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGAC 906
Query 9120 AATCTGCCGCCACTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGAC 9179
||||| || |||| ||||| | ||||| | || |||| || | | ||| ||||
Sbjct 905 GATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAG 846
Query 9180 GTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCA 9239
||| || || || || || || |||| || ||| ||||||| | ||| |||||
Sbjct 845 GTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGACCA 789
Query 9240 GAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTG 9299
|||||| |||||| ||||| || ||||||||||||| || ||||| |||| |
Sbjct 788 GAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTT 729
Query 9300 ACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAG 9357
|| |||| || ||||| || || ||||| || ||||| ||||||| ||||| ||||||
Sbjct 728 -CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAG 671
Query 9358 AAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCG 9417
||| || || | |||||| | ||||| || ||||||||||||| || |||||||||
Sbjct 670 AAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCC 611
Query 9418 AGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACG 9477
|| ||| ||| || |||||| || | | || ||||||| || ||||||| |||
Sbjct 610 AGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCTACG 554
Query 9478 TCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTG 9537
|| ||| |||||||| | |||||||| | ||| || | |||||||| ||||||
Sbjct 553 TCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTG 494
Query 9538 GCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAA 9597
|| || || || ||||| || | ||||| |||| || | |||||||||||||| |
Sbjct 493 GCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCA 434
Query 9598 AAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGC 9657
||| | || || || ||||||||||| || ||||| | | ||||| | || || | |
Sbjct 433 AAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTC 374
Query 9658 CCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGC 9717
||||| |||| || ||| || |||| | | ||||| || || ||||
Sbjct 373 CCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGC 314
Query 9718 TTTTCGATAGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGC---CGCCCGCCTTTG 9774
|| || || ||||| ||||| | ||||||| ||| | || ||| ||| |||
Sbjct 313 TTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGG---GGGCTTACGCGGGCCCTTG 257
Query 9775 TTGCGGTTAGCGATGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGGTTT 9834
|||||||| | | ||||||||| ||||| || || |||||| | |||| | |
Sbjct 256 TTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCG 197
Query 9835 ACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCG 9894
| ||| || | || || ||| || | |||||||| |||||||||||||| ||
Sbjct 196 ATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCT 137
Query 9895 GTTTTCTGCGGTTTGATGATGAGCTGG 9921
|||||| || ||||||||||||
Sbjct 136 TCCTTCTGCTCCTTCATGATGAGCTGG 110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 93340634261460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |