Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq52999 639 3e-179 >seq52999 Length=1923 Score = 639 bits (708), Expect = 3e-179 Identities = 1257/1827 (69%), Gaps = 59/1827 (3%) Strand=Plus/Minus Query 8126 ATCGGTGAGCTGTGATGTACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCTGACC 8185 || |||||||||||||| ||||| || || | | ||||| ||| || ||| || Sbjct 1908 ATGGGTGAGCTGTGATGCACGGCGGCGCGGAACGTGCGCGCCAGCCCGTCAACGCTCACG 1849 Query 8186 GGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACGGCGG 8245 ||||| |||||||| | | || | | |||||| ||||| ||||| | || |||||| Sbjct 1848 GGTGGTTCATACCAGCGATCATTGATAACGCACTCCACGTAGTCCAGCAGTTCGCGGCGG 1789 Query 8246 TCGAGTACCGGCACCGGTTCACCAAAGGTGAATGCCTCCATTTTCGGGGCGCTGGCGGTC 8305 || || ||||| | ||| || |||||||| || |||||| || || | | |||| Sbjct 1788 TCCAGCACCGGGATCGGGTCGCCAAAGGTAAACGCCTCCGA---CGCTGCCCCGCTGGTC 1732 Query 8306 Attttttt----tGCCGCA--GGTTGCG-GTGTTTTCCCTTTTTTC--TTGCTCATCAGT 8356 || || | ||| ||| || |||| | | | | || | | |||||||||||| Sbjct 1731 ATGTTATCCGGCTGCGGCACGGGCTGCGTGCGGGTGCGGTTCCTGCGTTTGCTCATCAGT 1672 Query 8357 AAAACTCCAGAATGGTGGATGTCAGCGGG-GTGCTGATACCGGCGGTG-AGTGGCTCATT 8414 ||| ||||| |||| | | ||| | |||| | | | | || || ||||| || Sbjct 1671 AAATCTCCACAATGTT------CTGCGTGTGTGCCGC--CTGTCCCTGCAGCGGCTCGTT 1620 Query 8415 TAACAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCT 8474 | ||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||| Sbjct 1619 TGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCCTCGCTGCGGCT 1560 Query 8475 GGCCTCATAGGTGGCGCTGCGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGA 8534 || |||||||| | | | |||||| || ||| |||||||||| |||||| || Sbjct 1559 GGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATAGACATAAATGA 1500 Query 8535 GCTG-GTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCAC-GGCGAATAACGTCT 8592 ||| | ||||||| | |||| ||||| | ||||| | || | ||||| | ||| Sbjct 1499 -CTGCGCGATGTCGAGGTGGCTGGCGTCAAACTCCAGCCGCCCGCTGGCGA-TGGTGTCG 1442 Query 8593 TTTGCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATATCGCGTG--CGG 8650 | ||||| ||||||| ||| |||||| | ||| | ||| | || | | | | Sbjct 1441 TAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTC-CTTCACCTG 1383 Query 8651 CGGGATAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTC 8710 ||||| |||| | || || | | ||||| | |||| |||||||| || || | Sbjct 1382 CGGGA-AGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGC 1324 Query 8711 CGATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAA 8770 |||| || |||||| || | | || || | | ||||| |||||||| | | Sbjct 1323 CGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGA 1264 Query 8771 AGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCG 8830 ||||||| || |||||||||||||||||| || | ||| ||||| || | ||| | | Sbjct 1263 AGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAG 1204 Query 8831 GCGGTGCCAGCACCACGCATCCGGCACTGTCGCCA--CGGTGTGAC-------GGGTCGT 8881 ||||||||| |||||||||||||| |||||||| | | || | ||||||| Sbjct 1203 GCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGT 1144 Query 8882 AACCAATCCAGACCGGGCGGGAGCCGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCC 8941 | || ||||| || |||||||||| | || | || | || |||| || Sbjct 1143 AGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCC 1084 Query 8942 ATTCTTCC-AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCC 9000 | ||||| ||| |||| |||||||| |||||| | | | |||| ||||||||| Sbjct 1083 AGACTTCCCAGC-TGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGACGCC 1025 Query 9001 TTGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGT 9060 ||||| | ||| | ||||| | |||||| | |||| || | ||||| ||||| Sbjct 1024 AGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAG-CGCGT 966 Query 9061 TTA-AGCTGCTCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGAC 9119 |||||||| | ||| ||||| ||||| || || || || |||| |||||| Sbjct 965 GCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGAC 906 Query 9120 AATCTGCCGCCACTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGAC 9179 ||||| || |||| ||||| | ||||| | || |||| || | | ||| |||| Sbjct 905 GATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGACTGATGGCTGAG 846 Query 9180 GTCGATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCA 9239 ||| || || || || || || |||| || ||| ||||||| | ||| ||||| Sbjct 845 GTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGCGAACCGGACCA 789 Query 9240 GAACGGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTG 9299 |||||| |||||| ||||| || ||||||||||||| || ||||| |||| | Sbjct 788 GAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTT 729 Query 9300 ACTCTGTG-AG-GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAG 9357 || |||| || ||||| || || ||||| || ||||| ||||||| ||||| |||||| Sbjct 728 -CT-TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAG 671 Query 9358 AAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCG 9417 ||| || || | |||||| | ||||| || ||||||||||||| || ||||||||| Sbjct 670 AAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCGTTGGTGCCC 611 Query 9418 AGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACG 9477 || ||| ||| || |||||| || | | || ||||||| || ||||||| ||| Sbjct 610 AGGAAATACAGGCACGCACCGTTACTGAGC--GTCA-TCGGGTCGCCCTTCAGGTCTACG 554 Query 9478 TCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTG 9537 || ||| |||||||| | |||||||| | ||| || | |||||||| |||||| Sbjct 553 TCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGCGCCTTACTG 494 Query 9538 GCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAA 9597 || || || || ||||| || | ||||| |||| || | |||||||||||||| | Sbjct 493 GCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCCTCGCGGGCA 434 Query 9598 AAATAAAACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGC 9657 ||| | || || || ||||||||||| || ||||| | | ||||| | || || | | Sbjct 433 AAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCGGACGGAGTACTTATTC 374 Query 9658 CCGGCGCGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGC 9717 ||||| |||| || ||| || |||| | | ||||| || || |||| Sbjct 373 CCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAACCTCCTGCAGC 314 Query 9718 TTTTCGATAGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGC---CGCCCGCCTTTG 9774 || || || ||||| ||||| | ||||||| ||| | || ||| ||| ||| Sbjct 313 TTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGG---GGGCTTACGCGGGCCCTTG 257 Query 9775 TTGCGGTTAGCGATGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGGTTT 9834 |||||||| | | ||||||||| ||||| || || |||||| | |||| | | Sbjct 256 TTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGAATTTGCCG 197 Query 9835 ACCCGTGCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCG 9894 | ||| || | || || ||| || | |||||||| |||||||||||||| || Sbjct 196 ATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGTCCTTTCCT 137 Query 9895 GTTTTCTGCGGTTTGATGATGAGCTGG 9921 |||||| || |||||||||||| Sbjct 136 TCCTTCTGCTCCTTCATGATGAGCTGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93340634261460