Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq52999 572 3e-159 >seq52999 Length=1923 Score = 572 bits (634), Expect = 3e-159 Identities = 1057/1534 (69%), Gaps = 31/1534 (2%) Strand=Plus/Minus Query 1292 AGCGGTTCGTTTAACAGGGCGTGCATGGTGGCCCATGCGATATCAGCGTGGCTGGCTTCC 1351 ||||| |||||| ||| ||||||||||| ||||| || | ||| |||||||| ||||| Sbjct 1630 AGCGGCTCGTTTGCCAGCGCGTGCATGGTCGCCCAGGCTAAATCGCCGTGGCTGACTTCC 1571 Query 1352 TCGGTGCGACTGGCCTCATAGGTGGCGCTGCGCCCGCTGCTGGTCATGGTTTTGCGGATG 1411 ||| |||| |||| |||||||| | | | |||||| || ||| ||||||||| Sbjct 1570 TCGCTGCGGCTGGTTTCATAGGTCGGACGGTTGCCGCTGGCCGTGGTGGCTTTGCGGATA 1511 Query 1412 GACATAAACGACTGTGTGACATC-AGTTGCTCCGGCGTCGTACTCCAGACAGCCAC-GGC 1469 |||||||| ||||| | || || || || | |||||| ||||||| | || | ||| Sbjct 1510 GACATAAATGACTGCGCGATGTCGAGGTGG-CTGGCGTCAAACTCCAGCCGCCCGCTGGC 1452 Query 1470 GAATCGTGTCTTTCGCCTTGAGCACCATTGCGGTTTTCATTTCTGGCGTGTA-ACGGATA 1528 || | ||||| | ||||| ||||||| ||| |||||| | || | || || | | Sbjct 1451 GA-TGGTGTCGTAAGCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGAC--AAA 1395 Query 1529 CCGCGTG-CCGCCGGGTAGAATGAGCGCACCAACTGGAATACACCGAGACCGAGGCCTGT 1587 | | | || |||| |||| | || || | |||| || || |||| ||| || Sbjct 1394 CTCCTTCACCTGCGGGAAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGT 1335 Query 1588 TGCGTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGGCTTCTGC 1647 | ||| |||||||| || |||||| || | || || ||| | | |||||| || || Sbjct 1334 GGAGTCGATGCCGATATAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGC 1275 Query 1648 CTGCGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACC 1707 |||||| |||||||| || ||||||||||||||| || ||||| |||||||| || Sbjct 1274 CTGCGCCCGGAAGTCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCC 1215 Query 1708 CGAAACCACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGAC----- 1762 || || | ||||| || | || || |||||||| ||||||||| | || | Sbjct 1214 CGGCACGGCAGGCGGTGCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTT 1155 Query 1763 ----GGGTCGTAGCCAATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGC 1818 ||||||||||| ||||| || | ||||||| || | || | || | Sbjct 1154 CGCGGGGTCGTAGCCGATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTC 1095 Query 1819 GAAGTCCTCCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAA 1878 ||||| ||| |||| ||| |||||||| ||||||| | | | |||| Sbjct 1094 AAAGTCGGTCCAGACTTCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAA 1035 Query 1879 TACCGATGCCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACT 1938 |||||| ||| |||||| | ||| ||||||| | |||||||| | ||||| || Sbjct 1034 TACCGACGCCAGATCGTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCT 975 Query 1939 GTTTTCGCGTCTG-AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCT 1997 || ||||| | ||||| || ||||| |||||| ||||| ||| | || || | Sbjct 974 GTAG-CGCGTGCGCAGCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTT 916 Query 1998 CAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGC 2057 ||| ||||| ||||| || |||| ||||| |||| || | || |||| || | | Sbjct 915 CAACGGTGACGATCTGGCGAAACTGGCCGTCTTCGCAGAGGCGACCGGCGGCCAGTGA-C 857 Query 2058 TG-TGACTGATGTCGATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGC 2116 || || |||| ||| || || | |||||||| |||| || |||||||||||| || Sbjct 856 TGATGGCTGAGGTCAATATCAACCCGGTCAGCTT---TGGCCCGGCCCTTGTTGAACTGC 800 Query 2117 TCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTT 2176 || |||||||| || || |||| ||||| || |||| || || |||||||| ||| Sbjct 799 GAACCGGACCAGAACGGATAGGCGCTGTGCGTGAGGCTGGACGGGGTGGAAAAGTAGGTT 740 Query 2177 GAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTC 2236 |||| | ||| ||| |||||||| || || ||||| |||| | |||||| ||| Sbjct 739 TCGCGCCACTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTC 680 Query 2237 GGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAA 2296 ||||||||||| |||||| | ||||| | ||||| || |||||| |||||| || Sbjct 679 GGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTGCGGGCG 620 Query 2297 TTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCGGTC 2356 |||||||| || ||| ||| || || ||| | || ||||||||||| || Sbjct 619 TTGGTGCCCAGGAAATACAGGCACGCACC---GTTACTGAGCGTCATCGGGTCGCCCTTC 563 Query 2357 AGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGC 2416 ||||| ||||| ||| || ||||| | |||||||| | | ||| |||| |||||| Sbjct 562 AGGTCTACGTCCACCTCGCGGGCAAATTCAATGATGTACTGCTTGAAGACGTGCGCCTGC 503 Query 2417 GTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCC 2476 | |||||||| || || || ||||| || | ||||| | ||||| | ||| ||| Sbjct 502 GCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGCATCGATCAGCGCC 443 Query 2477 TCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGG 2536 ||||||| ||| |||| || || ||||||||||| || || || | | ||| |||| Sbjct 442 TCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAGCAGGTTGCG--GACGG 385 Query 2537 TGCGCCAGT--CCTGCCCGGTACCACTGCAACTGGTATTCGAAAGACTGGTCGAAGAAAA 2594 | | | || ||| ||||||| |||||| |||| | | || ||||| Sbjct 384 AGTACTTATTCCCGGCCTCCCACCACTGGCGCTGGTAGCCGAACATCGAGCCGTGGAAAA 325 Query 2595 TTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGCCTCTTACGCT 2654 || | |||||| | | || |||||||| | |||||||| ||| ||||||| Sbjct 324 CCTCCTGCAGCTTCTCAATCTGTTCGTCGCTGAACAGGTTCTTTTCCGGGGGCTTACGCG 265 Query 2655 CCCCCTTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGT 2714 |||||||| ||||| | ||||| || || ||||| || || |||||| | |||| Sbjct 264 GGCCCTTGTTGCGGTTCTCCACGTTCGGATTCAGGTCCGCTTCATTGCCGCCATTGCTGA 205 Query 2715 AGCGGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGT 2774 | | || || || | ||||| ||||||| | |||||||| || || ||||||| Sbjct 204 ATTTGCCGATCCGGGCATGGCGCTCGGACTGCCGCGCCAGCAGGTCGATTTCCTTGAAGT 145 Query 2775 CGCCGCCTGACTTTTGCGGCTTGGCGATGAGCTG 2808 | ||| ||| ||| ||| ||||||||| Sbjct 144 CCTTTCCTTCCTTCTGCTCCTTCATGATGAGCTG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94926200705300