Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_029015.2
Length=33509
Score E
Sequences producing significant alignments: (Bits) Value
seq69575 271 2e-68
seq52999 167 5e-37
>seq69575
Length=1340
Score = 271 bits (300), Expect = 2e-68
Identities = 384/536 (72%), Gaps = 9/536 (2%)
Strand=Plus/Plus
Query 1572 GGGAAGAACTTGATCACCAGTTGATAAACTGCATCGCCGATCCCCGTGCCGTCGATAGCA 1631
|||||||| || | ||| || |||| || || |||| || || ||||| ||||| |
Sbjct 23 GGGAAGAATTTCAGCACAAGCTGATGTACCGCCGCGCCAATGCCGGTGCCATCGATGTCG 82
Query 1632 ATGTGCTGCACGTTGTA---GCGGGTGGTGATCTCTTTAATAAAATTGGCCTGCTCTTCG 1688
|| |||||||||||||| ||||||| | ||| |||||| || ||||| |||||
Sbjct 83 ATATGCTGCACGTTGTACATGCGGGTGAGGCGCTC---AATAAATTTCGCCTGTTCTTCA 139
Query 1689 TACTCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCT 1748
||||||||||||| | |||||| ||||| | |||||||| || || || || ||
Sbjct 140 AACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCCGGGTACCAGC 199
Query 1749 GGCGGGGCCAGCACAACCAGCCCGGCGCTGTCGCCTTTGCCGCTGCTGCCGTTGGGGTCA 1808
||||| | || | || || |||||||||||||||||| | ||| | |||||||| ||
Sbjct 200 GGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACCGTTGGGATCG 259
Query 1809 TAGCTAACCCAGACAGGGCGATTACCCAGTGGGCGGGGTGCAAACGGGTTCCAGTCCGGC 1868
|| | || |||||||||||| | | |||||||| || || | ||||||||||| |||
Sbjct 260 TACCCAATCCAGACAGGGCGGCTGGCGAGTGGGCGCGGGGCGTAGGGGTTCCAGTCAGGC 319
Query 1869 CACGCGTCCGGCATGTAGCCATCAACGCCGCAGCCCAGAATTGCGTTGTAGTCGAAGGCG 1928
|| | ||| | || ||||| ||||||||||| | | |||||||||| || ||
Sbjct 320 CA-GATGCCG--CTATATCCATCCACGCCGCAGCCAATTAGGGCGTTGTAGTTAAACGCA 376
Query 1929 CGTTCCCCGGCTTTAACGAACATGCAGCCATACAGGTTGGCGTATTCGTCGGGGGAGTTT 1988
||||| ||||| |||||| | || || ||||| || | || || | ||||
Sbjct 377 CGTTCACCGGCAACAACGAATTTACACATGTAGAGGTTATCGAAATCCTCATCGCTGTTT 436
Query 1989 TCGTTACGGATTTCATCGGTATCAACCAGATCGAAGCCGAGCTTCACGGCGTCTTCCAGC 2048
||| | ||||| || || || | || |||||| | | | | |||| | |
Sbjct 437 TCGCTGCGGATCTCTTCCAGGTCGATAAGTGGGAAGCCCTGATCGATGACGTCCTGAACG 496
Query 2049 GTGACTATCTGGCGCCAGATGTTATCCCCGCATAGCTTGCCGTTTTTCAGTGCCTT 2104
||||| ||||| ||||||||||| || ||||| ||| |||||| ||||| |||||
Sbjct 497 GTGACAATCTGCCGCCAGATGTTGTCACCGCACAGCACGCCGTTCTTCAGCGCCTT 552
Score = 167 bits (184), Expect = 5e-37
Identities = 193/260 (74%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 18997 TATAGGCCGATGTTAGCGCGGTGTTTTTCTAGCACATCCACACCGGCAACTTTGTAGATC 19056
|| |||||||| || |||||||| || || || | ||||| || |||| || |||||
Sbjct 1049 TACAGGCCGATATTGGCGCGGTGCTTCTCAAGGATGTCCACGCCATCAACCTTCCAGATC 1108
Query 19057 ATGTTGAGCACATCAACTTCGATGATCTCTTCGCCGTTGATGGTCAGCTTGTAATAGGTG 19116
|||||||||| || | ||| | | ||| ||||| | | ||| | |||| | |||||
Sbjct 1109 ATGTTGAGCAGGTCGATTTCAAAAAGCTCATCGCCATCTACGGTGATCTTGCAGTAGGTA 1168
Query 19117 TTTTTCAGGGTGTACTTATGCGAAGTGTCATCTCCGACTTTTGCCGAACCGAGATCCAGT 19176
|||||||| |||||||||||| |||| |||||| ||||| ||||| ||||| |
Sbjct 1169 TTTTTCAGCGTGTACTTATGCTGCGTGTTATCTCCCTGCTTTGCAGAACCCCAATCCATT 1228
Query 19177 TCAGTGAAGCGGCCACGTGTCTGGATTTCGCACGGTACAGCGTCGCCGGTTGCGTCGTCC 19236
||||| | |||||| || ||||| ||||| || | | || ||||| || ||||||||
Sbjct 1229 TCAGTCACGCGGCCGCGCGTCTGAATTTCACAGGCGATTGCTTCGCCAGTGGCGTCGTCG 1288
Query 19237 TGATAAGAGCCAGCAAAACG 19256
||| ||||| ||||| ||
Sbjct 1289 GAATAGGAGCCGGCAAAGCG 1308
>seq52999
Length=1923
Score = 167 bits (184), Expect = 5e-37
Identities = 331/477 (69%), Gaps = 21/477 (4%)
Strand=Plus/Minus
Query 2096 CAGTGCCTTATAACTGGTGTCGATATCCACCCGATCGGAGCGGCGGC--GGTTTTTATTG 2153
||||| || || ||| ||| ||||| ||||| || ||| ||| || || |||
Sbjct 863 CAGTGACTGATGGCTGAGGTCAATATCAACCCGGTC--AGCTTTGGCCCGGCCCTTGTTG 806
Query 2154 AACTGATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCA--CTGGAAGGCGTCGAAA 2211
||||| || | |||||| |||||||| ||| | | | ||||| || || ||||
Sbjct 805 AACTGCGAACCGGACCAGAACGGATAGGCGC--TGTGCGTGAGGCTGGACGGGGTGGAAA 748
Query 2212 AGTAGGTGCGGCGCAGTCCTTTTTGTGT--CGCCATGCCTGCGGCCACTGAGCGCAGTTT 2269
||||||| |||| ||| ||||| ||||||||| | |||||| ||||||
Sbjct 747 AGTAGGTTTCGCGCCA--CTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTC 690
Query 2270 GATGAAATTACTG-ATCCAGAAGGCTTCATCCAGGTACAGATCGCCGGTGTAGCTCTGGG 2328
||||| | | | |||||||| ||||||||||||||||| |||| |||||||| |
Sbjct 689 C-TGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCG 631
Query 2329 CCGTCGCGGCGGAGGTGCCGAGAAAATACAGGATCGCACCGTTGCTTAACTCAATGGCAT 2388
| || |||| |||||| || ||||||||| ||||||||| || | | || | |
Sbjct 630 CGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTGAGCGTCATCGGGT 571
Query 2389 CACCGCCCTTAAGTTCTACTCCTATTTCCCTTGCCAGCTTC--TGAATGAATCGCTTGAA 2446
||||||| || ||||| | | || | | || ||| || ||| | |||||||
Sbjct 570 ---CGCCCTTCAGGTCTACGTCCACCTCGC-GGGCAAATTCAATG-ATGTACTGCTTGAA 516
Query 2447 CTGGAACGCCTGGGCGCGGCTGGCTGACAGGAATATCTGGTTATTTCCGGTTTCCAGCGC 2506
| |||||| || |||||||| ||||||||||| || ||||| ||||||
Sbjct 515 GACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGC 456
Query 2507 ACGCAACAGCGCTTCGCGGGCAAAGTACCAAGTGGCACCAATTTGGCGCGATTTGAG 2563
| | |||||| ||||||||||| | | ||||| ||||| |||||||| || ||
Sbjct 455 ATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAG 399
Score = 82.4 bits (90), Expect = 2e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 1692 TCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCTGGC 1751
||||| ||||| ||||||| ||||| | | ||||||||| || ||||||||||| |||
Sbjct 1261 TCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGC 1202
Query 1752 GGGGCCAGCACAACCAGCCCGGCGCTGTCGCCTTT 1786
|| |||| || || |||||||||||||| ||
Sbjct 1201 GGTGCCATGACCACGCATCCGGCGCTGTCGCCGTT 1167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106996964600340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |