Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq69575 271 2e-68 seq52999 167 5e-37 >seq69575 Length=1340 Score = 271 bits (300), Expect = 2e-68 Identities = 384/536 (72%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 1572 GGGAAGAACTTGATCACCAGTTGATAAACTGCATCGCCGATCCCCGTGCCGTCGATAGCA 1631 |||||||| || | ||| || |||| || || |||| || || ||||| ||||| | Sbjct 23 GGGAAGAATTTCAGCACAAGCTGATGTACCGCCGCGCCAATGCCGGTGCCATCGATGTCG 82 Query 1632 ATGTGCTGCACGTTGTA---GCGGGTGGTGATCTCTTTAATAAAATTGGCCTGCTCTTCG 1688 || |||||||||||||| ||||||| | ||| |||||| || ||||| ||||| Sbjct 83 ATATGCTGCACGTTGTACATGCGGGTGAGGCGCTC---AATAAATTTCGCCTGTTCTTCA 139 Query 1689 TACTCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCT 1748 ||||||||||||| | |||||| ||||| | |||||||| || || || || || Sbjct 140 AACTCCATGCCGCGCAGCTGGTGACGCTCGATTACGCGGAATTTGCCGCCGGGTACCAGC 199 Query 1749 GGCGGGGCCAGCACAACCAGCCCGGCGCTGTCGCCTTTGCCGCTGCTGCCGTTGGGGTCA 1808 ||||| | || | || || |||||||||||||||||| | ||| | |||||||| || Sbjct 200 GGCGGCGAGAGGATGACAAGACCGGCGCTGTCGCCTTTGTCACTGTTACCGTTGGGATCG 259 Query 1809 TAGCTAACCCAGACAGGGCGATTACCCAGTGGGCGGGGTGCAAACGGGTTCCAGTCCGGC 1868 || | || |||||||||||| | | |||||||| || || | ||||||||||| ||| Sbjct 260 TACCCAATCCAGACAGGGCGGCTGGCGAGTGGGCGCGGGGCGTAGGGGTTCCAGTCAGGC 319 Query 1869 CACGCGTCCGGCATGTAGCCATCAACGCCGCAGCCCAGAATTGCGTTGTAGTCGAAGGCG 1928 || | ||| | || ||||| ||||||||||| | | |||||||||| || || Sbjct 320 CA-GATGCCG--CTATATCCATCCACGCCGCAGCCAATTAGGGCGTTGTAGTTAAACGCA 376 Query 1929 CGTTCCCCGGCTTTAACGAACATGCAGCCATACAGGTTGGCGTATTCGTCGGGGGAGTTT 1988 ||||| ||||| |||||| | || || ||||| || | || || | |||| Sbjct 377 CGTTCACCGGCAACAACGAATTTACACATGTAGAGGTTATCGAAATCCTCATCGCTGTTT 436 Query 1989 TCGTTACGGATTTCATCGGTATCAACCAGATCGAAGCCGAGCTTCACGGCGTCTTCCAGC 2048 ||| | ||||| || || || | || |||||| | | | | |||| | | Sbjct 437 TCGCTGCGGATCTCTTCCAGGTCGATAAGTGGGAAGCCCTGATCGATGACGTCCTGAACG 496 Query 2049 GTGACTATCTGGCGCCAGATGTTATCCCCGCATAGCTTGCCGTTTTTCAGTGCCTT 2104 ||||| ||||| ||||||||||| || ||||| ||| |||||| ||||| ||||| Sbjct 497 GTGACAATCTGCCGCCAGATGTTGTCACCGCACAGCACGCCGTTCTTCAGCGCCTT 552 Score = 167 bits (184), Expect = 5e-37 Identities = 193/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 18997 TATAGGCCGATGTTAGCGCGGTGTTTTTCTAGCACATCCACACCGGCAACTTTGTAGATC 19056 || |||||||| || |||||||| || || || | ||||| || |||| || ||||| Sbjct 1049 TACAGGCCGATATTGGCGCGGTGCTTCTCAAGGATGTCCACGCCATCAACCTTCCAGATC 1108 Query 19057 ATGTTGAGCACATCAACTTCGATGATCTCTTCGCCGTTGATGGTCAGCTTGTAATAGGTG 19116 |||||||||| || | ||| | | ||| ||||| | | ||| | |||| | ||||| Sbjct 1109 ATGTTGAGCAGGTCGATTTCAAAAAGCTCATCGCCATCTACGGTGATCTTGCAGTAGGTA 1168 Query 19117 TTTTTCAGGGTGTACTTATGCGAAGTGTCATCTCCGACTTTTGCCGAACCGAGATCCAGT 19176 |||||||| |||||||||||| |||| |||||| ||||| ||||| ||||| | Sbjct 1169 TTTTTCAGCGTGTACTTATGCTGCGTGTTATCTCCCTGCTTTGCAGAACCCCAATCCATT 1228 Query 19177 TCAGTGAAGCGGCCACGTGTCTGGATTTCGCACGGTACAGCGTCGCCGGTTGCGTCGTCC 19236 ||||| | |||||| || ||||| ||||| || | | || ||||| || |||||||| Sbjct 1229 TCAGTCACGCGGCCGCGCGTCTGAATTTCACAGGCGATTGCTTCGCCAGTGGCGTCGTCG 1288 Query 19237 TGATAAGAGCCAGCAAAACG 19256 ||| ||||| ||||| || Sbjct 1289 GAATAGGAGCCGGCAAAGCG 1308 >seq52999 Length=1923 Score = 167 bits (184), Expect = 5e-37 Identities = 331/477 (69%), Gaps = 21/477 (4%) Strand=Plus/Minus Query 2096 CAGTGCCTTATAACTGGTGTCGATATCCACCCGATCGGAGCGGCGGC--GGTTTTTATTG 2153 ||||| || || ||| ||| ||||| ||||| || ||| ||| || || ||| Sbjct 863 CAGTGACTGATGGCTGAGGTCAATATCAACCCGGTC--AGCTTTGGCCCGGCCCTTGTTG 806 Query 2154 AACTGATCGCCAGTCCAGAAAGGATAGGCTTCATGTTCTTCA--CTGGAAGGCGTCGAAA 2211 ||||| || | |||||| |||||||| ||| | | | ||||| || || |||| Sbjct 805 AACTGCGAACCGGACCAGAACGGATAGGCGC--TGTGCGTGAGGCTGGACGGGGTGGAAA 748 Query 2212 AGTAGGTGCGGCGCAGTCCTTTTTGTGT--CGCCATGCCTGCGGCCACTGAGCGCAGTTT 2269 ||||||| |||| ||| ||||| ||||||||| | |||||| |||||| Sbjct 747 AGTAGGTTTCGCGCCA--CTTCTTGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTC 690 Query 2270 GATGAAATTACTG-ATCCAGAAGGCTTCATCCAGGTACAGATCGCCGGTGTAGCTCTGGG 2328 ||||| | | | |||||||| ||||||||||||||||| |||| |||||||| | Sbjct 689 C-TGAAACTTCGGGATCCAGAAATATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCG 631 Query 2329 CCGTCGCGGCGGAGGTGCCGAGAAAATACAGGATCGCACCGTTGCTTAACTCAATGGCAT 2388 | || |||| |||||| || ||||||||| ||||||||| || | | || | | Sbjct 630 CGGTGCGGGCGTTGGTGCCCAGGAAATACAGGCACGCACCGTTACTGAGCGTCATCGGGT 571 Query 2389 CACCGCCCTTAAGTTCTACTCCTATTTCCCTTGCCAGCTTC--TGAATGAATCGCTTGAA 2446 ||||||| || ||||| | | || | | || ||| || ||| | ||||||| Sbjct 570 ---CGCCCTTCAGGTCTACGTCCACCTCGC-GGGCAAATTCAATG-ATGTACTGCTTGAA 516 Query 2447 CTGGAACGCCTGGGCGCGGCTGGCTGACAGGAATATCTGGTTATTTCCGGTTTCCAGCGC 2506 | |||||| || |||||||| ||||||||||| || ||||| |||||| Sbjct 515 GACGTGCGCCTGCGCCTTACTGGCTGAAAGGAATATCTGATTGCGCCCGGTGGTCAGCGC 456 Query 2507 ACGCAACAGCGCTTCGCGGGCAAAGTACCAAGTGGCACCAATTTGGCGCGATTTGAG 2563 | | |||||| ||||||||||| | | ||||| ||||| |||||||| || || Sbjct 455 ATCGATCAGCGCCTCGCGGGCAAAAAAGAAGGTGGCCCCAATCTGGCGCGACTTCAG 399 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 1692 TCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCTGGC 1751 ||||| ||||| ||||||| ||||| | | ||||||||| || ||||||||||| ||| Sbjct 1261 TCCATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGC 1202 Query 1752 GGGGCCAGCACAACCAGCCCGGCGCTGTCGCCTTT 1786 || |||| || || |||||||||||||| || Sbjct 1201 GGTGCCATGACCACGCATCCGGCGCTGTCGCCGTT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106996964600340