Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq81708 163 3e-35 seq85787 107 2e-18 >seq81708 Length=1085 Score = 163 bits (180), Expect = 3e-35 Identities = 144/180 (80%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || |||||||| ||||| |||||||||||||| | |||||||| || || |||| Sbjct 413 GTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAACCATC 354 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | ||||||||||| ||| ||||||| || || || || ||||| || ||||||||| | | Sbjct 353 CGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACGCGC 294 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAATGGC 123300 |||| || || |||||||| || ||||| |||| || ||||| || || || |||| || Sbjct 293 TGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAATTGC 234 >seq85787 Length=1013 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||||||||||||||| ||||| || |||||| | || ||||| | | |||| Sbjct 764 GTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAACATC 705 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | || ||||||||||||||||||||||| || ||||| ||||| || ||||| ||||| | Sbjct 704 CGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAACTCGC 645 Query 123241 TGACTCCGGAACAGCAG 123257 | ||| || |||||| Sbjct 644 TCACTAAAGAGCAGCAG 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539354243369200