Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_029091.1
Length=168771
Score E
Sequences producing significant alignments: (Bits) Value
seq81708 163 3e-35
seq85787 107 2e-18
>seq81708
Length=1085
Score = 163 bits (180), Expect = 3e-35
Identities = 144/180 (80%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180
|||| || |||||||| ||||| |||||||||||||| | |||||||| || || ||||
Sbjct 413 GTCAGCACCTGAACGTAAACGTACTGCGTCGTGAAACGTTGGAAGATGCCGTGAACCATC 354
Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240
| ||||||||||| ||| ||||||| || || || || ||||| || ||||||||| | |
Sbjct 353 CGGAAAAATATCCACAGTTGACCATTCGCGTTTCCGGCTATGCCGTGCGCTTTAACGCGC 294
Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAATGGC 123300
|||| || || |||||||| || ||||| |||| || ||||| || || || |||| ||
Sbjct 293 TGACGCCAGAGCAGCAGCGTGATGTTATTACTCGTACATTTACCGAAAGCCTGTAATTGC 234
>seq85787
Length=1013
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180
|||||||||||||||| ||||| || |||||| | || ||||| | | ||||
Sbjct 764 GTCAACATCTGAACGTCAACGTAATGAATCGTGAGATGCTGTTGGATGCCATGGAACATC 705
Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240
| || ||||||||||||||||||||||| || ||||| ||||| || ||||| ||||| |
Sbjct 704 CGGAGAAATATCCGCAGCTGACCATCCGCGTTTCTGGCTATGCTGTACGCTTCAACTCGC 645
Query 123241 TGACTCCGGAACAGCAG 123257
| ||| || ||||||
Sbjct 644 TCACTAAAGAGCAGCAG 628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539354243369200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |