Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq280 131 1e-25 seq886 82.4 5e-11 >seq280 Length=341618 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || ||||| ||| | ||||| || || || | || || ||| Sbjct 106710 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 106651 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| || ||| || || |||||||| ||| |||| | Sbjct 106650 TCCGATACTATTGAGAAT--GTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAG 106593 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| ||||| |||||||| ||||||||||| |||| ||||| ||||||||||| Sbjct 106592 ATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATT 106533 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| || | ||| ||||| | ||| | ||||| ||| Sbjct 106532 ACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGC 106480 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || ||||| ||| | ||||| || || || | || || ||| Sbjct 114956 AAAATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 114897 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| || ||| || || |||||||| ||| |||| | Sbjct 114896 TCCGATACTATTGAGAAT--GTAAAAGCCAAGATTCAAGACAAAGAGGGTATTCCACCAG 114839 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| ||||| |||||||| ||||||||||| |||| ||||| ||||||||||| Sbjct 114838 ATCAGCAACGTTTAATCTTTGCCGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATT 114779 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| || | ||| ||||| | ||| | ||||| ||| Sbjct 114778 ACAACATCCAAAAGGAGTCTACACTTCATCTGGTTCTTCGTCTACGTGGTGGC 114726 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || |||||||| |||| || || ||||| || ||||| ||||| ||||||||||| Sbjct 105246 GATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCCGGTAAACAATTGGAA 105187 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| |||||| || |||||||||||||| ||| || | |||||||| || Sbjct 105186 GACGGCCGCACCTTGTCGGACTACAACATCCAAAAGGAGTCTACCCTCCATTTGGTCCTG 105127 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 105126 CGTCTTCGCGGTGG 105113 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| || || ||||| ||| ||| || | || || || | Sbjct 105568 AATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATAACCTTGGAGGTTGAGCCATC 105509 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| | || ||||| || || ||||| |||||| |||| || || Sbjct 105508 CGACACCATTGAAAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCA 105449 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || |||||||| || || || | || |||| |||| |||||| || ||||| Sbjct 105448 GCAACGTTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGGCGCACCTTGTCGGACTACAA 105389 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| ||| || | |||||||| ||||| | ||||| || Sbjct 105388 CATCCAAAAGGAGTCTACCCTCCATTTGGTCCTGCGTCTCCGTGGTGG 105341 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || ||||| || || ||||| ||| ||| || | || || || | || Sbjct 106023 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 105964 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| || || || || |||||| |||| || | Sbjct 105963 GACACCATCGAAAAT--GTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATC 105906 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || || ||||| ||||| | || || | |||| |||||| || |||| Sbjct 105905 AGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACA 105846 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| |||||||||| ||||| | ||||| || Sbjct 105845 ACATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGG 105797 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || ||||| || || ||||| ||| ||| || | || || || | || Sbjct 114269 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAAACTATCACCTTGGAGGTTGAGCCATCA 114210 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| || || || || |||||| |||| || | Sbjct 114209 GACACCATCGAAAAT--GTTAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATC 114152 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || || ||||| ||||| | || || | |||| |||||| || |||| Sbjct 114151 AGCAGCGTTTGATCTTCGCCGGCAAACAGCTTGAAGATGGCCGCACCTTGTCTGACTACA 114092 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| |||||||||| ||||| | ||||| || Sbjct 114091 ACATCCAAAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTTCGTGGTGG 114043 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || ||||| || ||||| || ||| | || Sbjct 105702 GACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTAATCTTCGCCGGCAAGCAACTCGAA 105643 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| |||||||||||||| ||| || | || |||||| || Sbjct 105642 GATGGCCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCTACGCTCCACTTGGTTCTG 105583 Query 28003 CGTTTGCGTGGCGG 28016 ||| |||| || || Sbjct 105582 CGTCTGCGCGGAGG 105569 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || ||||| || ||||| || ||| | || Sbjct 113948 GACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTAATCTTCGCCGGCAAGCAACTCGAA 113889 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| |||||||||||||| ||| || | || |||||| || Sbjct 113888 GATGGCCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCTACGCTCCACTTGGTTCTG 113829 Query 28003 CGTTTGCGTGGCGG 28016 ||| |||| || || Sbjct 113828 CGTCTGCGCGGAGG 113815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| || || | || || ||| || Sbjct 106251 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 106192 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || || |||||| | || || | Sbjct 106191 GATACTATCGAAAAT--GTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATC 106134 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || ||||| || ||||| || || | || || | |||| |||||||||||| | Sbjct 106133 AACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATA 106074 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| || ||||||| || ||||| | ||||| || Sbjct 106073 ACATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 106025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| || || | || || ||| || Sbjct 114497 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACCATCACTCTGGAGGTTGAACCTTCC 114438 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| || || |||||| | || || | Sbjct 114437 GATACTATCGAAAAT--GTGAAAGCCAAAATCCAAGATAAGGAAGGTATCCCACCAGATC 114380 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || ||||| || ||||| || || | || || | |||| |||||||||||| | Sbjct 114379 AACAGCGTTTAATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGATTATA 114320 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| || ||||||| || ||||| | ||||| || Sbjct 114319 ACATACAAAAAGAGTCTACCCTGCATTTAGTCCTGCGTCTCCGTGGTGG 114271 >seq886 Length=177178 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24563 CACGGATTTCATATTCACGAATTTGGCGATGTGACCAACGGTTGCACGTCGGCCGGTGAG 24622 || || || ||| | ||||||||||| ||| ||||| || ||||| ||||| ||| Sbjct 132136 CATGGCTTCCATGTGCACGAATTTGGAGATAACACCAATGGCTGCACATCGGCTGGTCCC 132077 Query 24623 CATTTCAATCCGTTTCACCAAGATCACGGTGGTCCTAAGGATGCAATTCGTCACATGGGT 24682 ||||||||||| | | |||| || || | ||| | || | || |||||| | ||| Sbjct 132076 CATTTCAATCCAGCTGGCAAAGAGCATGGCGCTCCAACCGACGAAAATCGTCATTTAGGT 132017 Query 24683 GATTTGGGTAACGTT 24697 |||||||||||| || Sbjct 132016 GATTTGGGTAACATT 132002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355486505883090