Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq76387 100 2e-16
seq28390 100 2e-16
seq280 87.8 2e-12
seq2574 84.2 2e-11
>seq76387
Length=1185
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||| || || || || ||||| | || || || |||| ||
Sbjct 779 CACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTC 838
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | ||| | || ||| ||||||
Sbjct 839 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 898
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| ||| || | || | | |||||||| | |||||| || | ||||| | ||
Sbjct 899 GATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 958
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || || |||||||| |||||
Sbjct 959 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 988
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || ||| ||| ||||| || || || || | || || || |||| ||
Sbjct 207 ACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCG 266
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| |||||||| || || |||||||||||||| | ||| | || ||| ||||| |
Sbjct 267 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGG 326
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| ||| || | || | | || ||||| | |||||| || | ||||| | ||
Sbjct 327 ATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTG 386
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| ||||| |||||
Sbjct 387 CCGGTGAGGGTCTTAACGAAGATCTGCAT 415
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
||||| || || || ||| || || || |||| || || || ||||| || || ||
Sbjct 573 TTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGATG 632
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|||||||||||||| | ||| | || ||| ||||| ||| ||| || | || |
Sbjct 633 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCA 692
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276
| || ||||| | |||||| || | ||||| | || || || || || ||||| |||
Sbjct 693 ATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAG 752
Query 39277 ATTTGCAT 39284
|| |||||
Sbjct 753 ATCTGCAT 760
>seq28390
Length=4902
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| || || ||||| || || | ||| || || |||| ||
Sbjct 516 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 457
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|||||||| || || || || |||||||||||||||| || | || ||| |||||| |
Sbjct 456 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 397
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || || | || | | |||||| | ||| || || | ||||| | ||
Sbjct 396 ATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTG 337
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
||||| || || || |||||||||||||| |||
Sbjct 336 CCCGTGAGGGTCTTCACAAAGATTTGCATGTTT 304
>seq280
Length=341618
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134
|| ||||| || || |||||||||||| |||||||||| |||| || || | || ||
Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAG-GTGCGGCCATCTTC 106101
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||| ||||| || || || | |||||| || || |||||| | | || || ||
Sbjct 106102 GAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG-ATACCTTCCTTATCTT 106160
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| ||| | | | | |||||| | || || |||| ||||| |||
Sbjct 106161 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 106220
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || |||| ||||||||||| ||||||||
Sbjct 106221 TGCCAGTCAATGTTTTAACAAATATTTGCAT 106251
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134
|| ||||| || || |||||||||||| |||||||||| |||| || || | || ||
Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAG-GTGCGGCCATCTTC 114347
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193
||||| ||||| || || || | |||||| || || |||||| | | || || ||
Sbjct 114348 GAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG-ATACCTTCCTTATCTT 114406
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|||||| ||| | | | | |||||| | || || |||| ||||| |||
Sbjct 114407 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 114466
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || |||| ||||||||||| ||||||||
Sbjct 114467 TGCCAGTCAATGTTTTAACAAATATTTGCAT 114497
>seq2574
Length=80092
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || ||| || ||||| |||| || ||||| ||||| || || ||
Sbjct 58862 TTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 58921
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
|| ||||||||||| | || | || ||| |||||| ||| || || | || |
Sbjct 58922 AGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCG 58981
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276
| || ||||| | |||||| || | ||||| | || ||||| || || || || |||
Sbjct 58982 ATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 59041
Query 39277 ATTTGCATCTT 39287
|| ||||||||
Sbjct 59042 ATCTGCATCTT 59052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429091875009710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |