Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq76387 100 2e-16 seq28390 100 2e-16 seq280 87.8 2e-12 seq2574 84.2 2e-11 >seq76387 Length=1185 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || ||||| | || || || |||| || Sbjct 779 CACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCGTCCTC 838 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | ||| | || ||| |||||| Sbjct 839 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 898 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | |||||||| | |||||| || | ||||| | || Sbjct 899 GATCTTCGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCGAGGGTGATGGTCTT 958 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||| ||||| Sbjct 959 GCCGGTGAGGGTCTTCACAAAGATCTGCAT 988 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| ||||| || || || || | || || || |||| || Sbjct 207 ACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCG 266 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| |||||||| || || |||||||||||||| | ||| | || ||| ||||| | Sbjct 267 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGG 326 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| || | || | | || ||||| | |||||| || | ||||| | || Sbjct 327 ATCTTCGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTG 386 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| ||||| Sbjct 387 CCGGTGAGGGTCTTAACGAAGATCTGCAT 415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || ||| || || || |||| || || || ||||| || || || Sbjct 573 TTTTGGATGTTGTAGTCGCTGAGGGTGCGACCGTCCTCGAGTTGCTTGCCAGCGAAGATG 632 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 |||||||||||||| | ||| | || ||| ||||| ||| ||| || | || | Sbjct 633 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTCTCA 692 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | || ||||| | |||||| || | ||||| | || || || || || ||||| ||| Sbjct 693 ATGGTGTCGCTGGGCTCCACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTAACGAAG 752 Query 39277 ATTTGCAT 39284 || ||||| Sbjct 753 ATCTGCAT 760 >seq28390 Length=4902 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || ||||| || || | ||| || || |||| || Sbjct 516 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 457 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| || || || || |||||||||||||||| || | || ||| |||||| | Sbjct 456 AGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 397 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | |||||| | ||| || || | ||||| | || Sbjct 396 ATCTTTGCCTTCACATTCTCGATCGTATCAGAGGGCTCGACCTCGAGGGTGATGGTCTTG 337 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| || || || |||||||||||||| ||| Sbjct 336 CCCGTGAGGGTCTTCACAAAGATTTGCATGTTT 304 >seq280 Length=341618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 || ||||| || || |||||||||||| |||||||||| |||| || || | || || Sbjct 106043 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAG-GTGCGGCCATCTTC 106101 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || | |||||| || || |||||| | | || || || Sbjct 106102 GAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG-ATACCTTCCTTATCTT 106160 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||| | | | | |||||| | || || |||| ||||| ||| Sbjct 106161 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 106220 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||||||||| |||||||| Sbjct 106221 TGCCAGTCAATGTTTTAACAAATATTTGCAT 106251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 || ||||| || || |||||||||||| |||||||||| |||| || || | || || Sbjct 114289 ACTAAATGCAGGGTAGACTCTTTTTGTATGTTATAATCGGACAAG-GTGCGGCCATCTTC 114347 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || | |||||| || || |||||| | | || || || Sbjct 114348 GAGCTGCTTGCCGGCGAAGATTAAACGCTGTTGATCTGGTGGG-ATACCTTCCTTATCTT 114406 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| ||| | | | | |||||| | || || |||| ||||| ||| Sbjct 114407 GGATTTTGGCTTTCACATTTTCGATAGTATCGGAAGGTTCAACCTCCAGAGTGATGGTTT 114466 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| ||||||||||| |||||||| Sbjct 114467 TGCCAGTCAATGTTTTAACAAATATTTGCAT 114497 >seq2574 Length=80092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || ||| || ||||| |||| || ||||| ||||| || || || Sbjct 58862 TTCTGGATGTTGTAGTCGCTCAGCGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 58921 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || ||| |||||| ||| || || | || | Sbjct 58922 AGTCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCG 58981 Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAG 39276 | || ||||| | |||||| || | ||||| | || ||||| || || || || ||| Sbjct 58982 ATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAG 59041 Query 39277 ATTTGCATCTT 39287 || |||||||| Sbjct 59042 ATCTGCATCTT 59052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429091875009710