Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq22 223 3e-53
seq59797 140 3e-28
>seq22
Length=933496
Score = 223 bits (246), Expect = 3e-53
Identities = 432/632 (68%), Gaps = 18/632 (3%)
Strand=Plus/Minus
Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430
|| ||||| || || || |||||||| ||||| | ||| |||| ||| || || |||
Sbjct 329810 ACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCA 329751
Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490
|| || ||||||||| || | || || || |||||||| || | || ||||| |
Sbjct 329750 ATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCA 329691
Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550
|| || || | || || || ||| || | | | || | |||| | ||
Sbjct 329690 ATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631
Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610
|||||||| ||||| || |||||||| || ||| || || ||||| || || || ||
Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571
Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670
||||||| || | || || |||||||| || | ||||| ||| |||||| |||
Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511
Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC---TTTGTCTTTA 4727
||||| || |||||||| |||| || || || || | |||| ||| | |
Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAA---GTTGGCCGATTTCGATGAA 329454
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTT 4786
||||| | |||||| | ||| || |||||| ||| || || || | ||||| ||
Sbjct 329453 ATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCA-GGCATCGTCTCAATAGCATT 329395
Query 4787 AAATAATTTA---CTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841
|| || | | |||| || | | || | |||||| || || |||| || |||
Sbjct 329394 GAACAAGTAATCCCTTTGCTTGCCA-----TCCTTAATATATGTATCAATTAATATGCTG 329340
Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901
|||||||||||||| | ||| || || || || |||||||| || ||||| | || |||
Sbjct 329339 TACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCT 329280
Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961
|| | ||||||||| | | || | ||| ||||||||||| || || ||||| || |
Sbjct 329279 GTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAG 329220
Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAA 4993
|| ||||| || |||||||| || || || ||
Sbjct 329219 GCGGCAAAGAATGCCAAAACGTGCGAAATGAA 329188
>seq59797
Length=1646
Score = 140 bits (154), Expect = 3e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 4583 AATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT 4642
||| | ||| ||||| || || || || ||||| ||||||||||| || ||||| || ||
Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576
Query 4643 AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGA 4702
| |||||||| ||||| ||||| || ||||||||||| ||||| ||||||| ||
Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516
Query 4703 CCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAA 4761
|| || || ||| | | ||| || ||||| || | |||||||| |||||| |||||
Sbjct 1515 ACCAAATGATGCTTTC-TCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAA 1457
Query 4762 CGCACGGAATTGTGTATATAGCGTTAAATAA 4792
||| ||||| || | |||||||| || ||
Sbjct 1456 TGCATGGAATAGTTTCAATAGCGTTGAACAA 1426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426598511511110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |