Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq22 223 3e-53 seq59797 140 3e-28 >seq22 Length=933496 Score = 223 bits (246), Expect = 3e-53 Identities = 432/632 (68%), Gaps = 18/632 (3%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||| || || || |||||||| ||||| | ||| |||| ||| || || ||| Sbjct 329810 ACCAGCAAGCGATCTGCCACAAATTCAATATAATCAGACATTAGTTGGCAATTCATGCCA 329751 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 || || ||||||||| || | || || || |||||||| || | || ||||| | Sbjct 329750 ATCAAATTCACAGGTAAGGCATCAGTTAAGAATTCTTGTTCAATTTTAACAGCTTCAGCA 329691 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || | || || || ||| || | | | || | |||| | || Sbjct 329690 ATGATTTCAATAATACGGTCCCTACTTGGCTTCTGAATGAGGTGTTGGAACATCAGGCAA 329631 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||| ||||| || |||||||| || ||| || || ||||| || || || || Sbjct 329630 GCAAAATCGCAATGTAATCCTTCGTCCCTTGAAATTAGCTCATTAGAGAATGTCAAACCA 329571 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||||| || | || || |||||||| || | ||||| ||| |||||| ||| Sbjct 329570 GGCATTAGGCCCCGTTTCTTCAGCCAAAAGATTGAAGCAAAACTGCCACTAAAGAAAATG 329511 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC---TTTGTCTTTA 4727 ||||| || |||||||| |||| || || || || | |||| ||| | | Sbjct 329510 CCTTCAACCGCGGCAAATGCTATTATACGTTCGCCAAA---GTTGGCCGATTTCGATGAA 329454 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTT 4786 ||||| | |||||| | ||| || |||||| ||| || || || | ||||| || Sbjct 329453 ATCCACGCCAGTGCCCAATCAGCCTTGCGCTTAACAGCA-GGCATCGTCTCAATAGCATT 329395 Query 4787 AAATAATTTA---CTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || | | |||| || | | || | |||||| || || |||| || ||| Sbjct 329394 GAACAAGTAATCCCTTTGCTTGCCA-----TCCTTAATATATGTATCAATTAATATGCTG 329340 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||||||||| | ||| || || || || |||||||| || ||||| | || ||| Sbjct 329339 TACATTTCAGAATGCACATTCTCCATGGCGATTTGAAATCCATAGAAGCAACGCGCCTCT 329280 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 || | ||||||||| | | || | ||| ||||||||||| || || ||||| || | Sbjct 329279 GTGATTTGAACTTCTTGGCTGAAGCGTTCAACTAAGTTTTCATTCACAATACCATCGGAG 329220 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 || ||||| || |||||||| || || || || Sbjct 329219 GCGGCAAAGAATGCCAAAACGTGCGAAATGAA 329188 >seq59797 Length=1646 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 4583 AATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT 4642 ||| | ||| ||||| || || || || ||||| ||||||||||| || ||||| || || Sbjct 1635 AATTAATTCATTAGAGAATGTCAAACCAGGCATCAAACCTCTCTTCTTGAGCCAGAAAAT 1576 Query 4643 AGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGA 4702 | |||||||| ||||| ||||| || ||||||||||| ||||| ||||||| || Sbjct 1575 GGATGCAAATGAACCAGAGAAGAAAATACCTTCTACGGCAGCAAATGCTACTAGTCTCTC 1516 Query 4703 CCCGAACGA-GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAA 4761 || || || ||| | | ||| || ||||| || | |||||||| |||||| ||||| Sbjct 1515 ACCAAATGATGCTTTC-TCGTCATTGATCCACTTAACTGCCCAGTCAGCTTTGCGCTTAA 1457 Query 4762 CGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||| ||||| || | |||||||| || || Sbjct 1456 TGCATGGAATAGTTTCAATAGCGTTGAACAA 1426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426598511511110