Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19]
86,670 sequences; 1,113,962,544 total letters
Query= NC_030940.1
Length=32637
Score E
Sequences producing significant alignments: (Bits) Value
seq52999 93.3 9e-15
>seq52999
Length=1923
Score = 93.3 bits (102), Expect = 9e-15
Identities = 524/821 (64%), Gaps = 31/821 (4%)
Strand=Plus/Minus
Query 12121 GCCTTGAGCACCAGGGCGTTCTTCGCCTCCAGGCTGTAGTGAATCGGAGTAGCCCGGGGG 12180
||||| |||||||||||||| ||| | | | || | ||| || | | || | |||
Sbjct 1438 GCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGG 1379
Query 12181 AAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATG 12240
|||||| |||| || ||| | || || ||||||||||| ||||||||||||
Sbjct 1378 AAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATA 1319
Query 12241 TGCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGAC 12300
| |||||| | ||| |||| || ||| | ||||| | ||| |
Sbjct 1318 TAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCC 1259
Query 12301 GTCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGG 12360
|||| ||||| ||| ||| ||||| |||||||||||||||||| | |||||
Sbjct 1258 ATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGT 1199
Query 12361 GCAACGACAACGCA--CGTCGC-GTCGTCG---CGGGTTCGACT---GGGGTCATACCCG 12411
|| | ||| ||||| || ||| |||| || | |||| | |||||| || |||
Sbjct 1198 GCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCG 1139
Query 12412 AGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCGGTCCATA-G 12470
| ||| || | ||||||| ||| | || || |||||||||| |
Sbjct 1138 ATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACT 1079
Query 12471 GCCCA--AGTCGGAATAGCAGCGCTCCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCT- 12527
|||| ||| ||| || ||| ||||| |||| | | | | | |
Sbjct 1078 TCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC-GCCAGATC 1020
Query 12528 GTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTA-CTCCAGCTGCA 12586
||| || || |||||| | ||| | | | | ||| | ||| | | || |||
Sbjct 1019 GTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGC-GCA 961
Query 12587 GGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCT 12646
| |||||||||| ||||||| ||||||||| | || |||| || |||| || ||
Sbjct 960 GCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCT 901
Query 12647 TGCGCCACTGCCCGTCCGGGCACAACGCG-CCGGCGTGGATCTGCGCTTCGCTG-GGCCA 12704
||| |||| ||||| ||| | ||| |||||| | | | |||| || ||
Sbjct 900 GGCGAAACTGGCCGTCTTCGCA-GAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCA 842
Query 12705 ----CGGCCCGGCCTTCTTTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACG 12760
| ||||| | |||| | | || ||| ||||| | |||| |||| |||
Sbjct 841 ATATCAACCCGGTCAGCTTT--GGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACG 784
Query 12761 GATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGAGAAGTAGGTCAGGCGCCACTTTG 12817
|||| || |||||| | |||| || ||||| |||||||| |||||||||
Sbjct 783 GATAGGCGCTGTGCGTGA---GGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCT 727
Query 12818 CATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACA 12877
||| ||||| || ||||| ||||||| | ||| || || |||||||||||
Sbjct 726 TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAAT 667
Query 12878 CTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTG 12918
||| || | ||| | | |||||| ||||||||||| |||
Sbjct 666 ATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTG 626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 104209436497460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |