Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhagoletis_20zephyria_20[refseq_20GCF_5F001687245.1_202016-07-19] 86,670 sequences; 1,113,962,544 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq52999 93.3 9e-15 >seq52999 Length=1923 Score = 93.3 bits (102), Expect = 9e-15 Identities = 524/821 (64%), Gaps = 31/821 (4%) Strand=Plus/Minus Query 12121 GCCTTGAGCACCAGGGCGTTCTTCGCCTCCAGGCTGTAGTGAATCGGAGTAGCCCGGGGG 12180 ||||| |||||||||||||| ||| | | | || | ||| || | | || | ||| Sbjct 1438 GCCTTCAGCACCAGGGCGTTTTTCACGTTCGGGTTATAGACAAACTCCTTCACCTGCGGG 1379 Query 12181 AAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATG 12240 |||||| |||| || ||| | || || ||||||||||| |||||||||||| Sbjct 1378 AAGAAGGCTTTGACATTCTCGTATACGCCAAGCCCGACGCCGGTGGAGTCGATGCCGATA 1319 Query 12241 TGCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGAC 12300 | |||||| | ||| |||| || ||| | ||||| | ||| | Sbjct 1318 TAGGTGACGTTATACTGCTGCGTCAGCGTCCTGATGGCGTCAGCCTGCGCCCGGAAGTCC 1259 Query 12301 GTCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGG 12360 |||| ||||| ||| ||| ||||| |||||||||||||||||| | ||||| Sbjct 1258 ATCCCGCGCCACTGGTGACGCTCAAGGATGCGGAACTTGCCGCCCGGCACGGCAGGCGGT 1199 Query 12361 GCAACGACAACGCA--CGTCGC-GTCGTCG---CGGGTTCGACT---GGGGTCATACCCG 12411 || | ||| ||||| || ||| |||| || | |||| | |||||| || ||| Sbjct 1198 GCCATGACCACGCATCCGGCGCTGTCGCCGTTCTGCGTTCCCTTCGCGGGGTCGTAGCCG 1139 Query 12412 AGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCGGTCCATA-G 12470 | ||| || | ||||||| ||| | || || |||||||||| | Sbjct 1138 ATCCACACTTCTTTCCAGCCGAACGGGCGCAGCGCCAGCGCCTCAAAGTCGGTCCAGACT 1079 Query 12471 GCCCA--AGTCGGAATAGCAGCGCTCCAGGTCGGCCAAGGCGAATGCAGCCTGGGTGCT- 12527 |||| ||| ||| || ||| ||||| |||| | | | | | | Sbjct 1078 TCCCAGCTGTCCACCATGCATTTCTGCAGCATGGCCAGCTGGAATACCGAC-GCCAGATC 1020 Query 12528 GTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTA-CTCCAGCTGCA 12586 ||| || || |||||| | ||| | | | | ||| | ||| | | || ||| Sbjct 1019 GTCCATAAAGACGCACATCAGCAGGTTCTGGTAATCCTCCGGGCTGTAGCGCGTGC-GCA 961 Query 12587 GGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCT 12646 | |||||||||| ||||||| ||||||||| | || |||| || |||| || || Sbjct 960 GCTGCTCCAGGTCAAACAGGTCACAGCCGCCGCGCACCGCATCTTCAACGGTGACGATCT 901 Query 12647 TGCGCCACTGCCCGTCCGGGCACAACGCG-CCGGCGTGGATCTGCGCTTCGCTG-GGCCA 12704 ||| |||| ||||| ||| | ||| |||||| | | | |||| || || Sbjct 900 GGCGAAACTGGCCGTCTTCGCA-GAGGCGACCGGCGGCCAGTGACTGATGGCTGAGGTCA 842 Query 12705 ----CGGCCCGGCCTTCTTTCCGCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACG 12760 | ||||| | |||| | | || ||| ||||| | |||| |||| ||| Sbjct 841 ATATCAACCCGGTCAGCTTT--GGCCCGGCCCTTGTTGAACTGCGAACCGGACCAGAACG 784 Query 12761 GATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGAGAAGTAGGTCAGGCGCCACTTTG 12817 |||| || |||||| | |||| || ||||| |||||||| ||||||||| Sbjct 783 GATAGGCGCTGTGCGTGA---GGCTGGACGGGGTGGAAAAGTAGGTTTCGCGCCACTTCT 727 Query 12818 CATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACA 12877 ||| ||||| || ||||| ||||||| | ||| || || ||||||||||| Sbjct 726 TGTGCAGCGCCATGCCGGACGCCACTTTCTGCAGTTCCTGAAACTTCGGGATCCAGAAAT 667 Query 12878 CTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTG 12918 ||| || | ||| | | |||||| ||||||||||| ||| Sbjct 666 ATTCATCCAGGTACAGATTGCCGTGATAGCTCTGCGCGGTG 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104209436497460